CGE -2016v4n1 - page 12

Cancer Genetics and Epigenetics 2016, Vol.4, No.1, 1-10
9
Gautier L., Cope L., Bolstad B.M., and Irizarry R.A., 2004, affy—analysis of Affymetrix GeneChip data at the probe level, Bioinformatics, 20: 307-315
P
Mid:14960456
Gentleman R.C., Carey V.J., Bates D.M., Bolstad B., Dettling M., Dudoit S., Ellis B., Gautier L., Ge Y., and Gentry J., 2004, Bioconductor: open software
development for computational biology and bioinformatics, Genome biology, 5: 1
P
Mid:15461798 PMCid:PMC545600
Huang D.W., Sherman B.T., and Lempicki R.A., 2009, Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources, Nature
protocols, 4: 44-57
P
Mid:19131956
Johnson R., 2012, Long non-coding RNAs in Huntington's disease neurodegeneration, Neurobiology of disease, 46: 245-254
PMid:22202438
Langfelder P., and Horvath S., 2008, WGCNA: an R package for weighted correlation network analysis, BMC bioinformatics, 9: 1
PMid:19114008 PMCid:PMC2631488
Langmead B., Trapnell C., Pop M., and Salzberg S.L., 2009, Ultrafast and memory-efficient alignment of short DNA sequences to the human genome, Genome
biology, 10: 1
P
Mid:19261174 PMCid:PMC2690996
Lee H.K., Hsu A.K., Sajdak J., Qin J., and Pavlidis P., 2004, Coexpression analysis of human genes across many microarray data sets, Genome research, 14:
1085-1094
P
Mid:15173114 PMCid:PMC419787
Liao Q., Liu C., Yuan X., Kang S., Miao R., Xiao H., Zhao G., Luo H., Bu D., and Zhao H., 2011, Large-scale prediction of long non-coding RNA functions in
a coding–non-coding gene co-expression network, Nucleic acids research, 39: 3864-3878
P
Mid:21247874 PMCid:PMC3089475
Lu J., Lee J.C., Salit M.L., and Cam M.C., 2007, Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: high-resolution annotation
for microarrays, BMC bioinformatics, 8: 1
PMid:17394657 PMCid:PMC1853115
Luo F., Yang Y., Zhong J., Gao H., Khan L., Thompson D.K., and Zhou J., 2007, Constructing gene co-expression networks and predicting functions of
unknown genes by random matrix theory, BMC bioinformatics, 8: 1
PMid:17697349 PMCid:PMC2212665
Mercer T.R., Dinger M.E., and Mattick J.S., 2009, Long non-coding RNAs: insights into functions, Nature Reviews Genetics, 10: 155-159
P
Mid:19188922
Oterino A., Toriello M., Cayón A., Castillo J., Colas R., Alonson
Arranz A., Ruiz
Alegria C., Quintela E., Monton F., and Ruiz
Lavilla N., 2008,
Multilocus analyses reveal involvement of the ESR1, ESR2, and FSHR genes in migraine, Headache: The Journal of Head and Face Pain, 48: 1438-1450
Pang K.C., Frith M.C., and Mattick J.S., 2006, Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function, Trends in Genetics,
22: 1-5
PMid:16290135
Pirskanen M., Hiltunen M., Mannermaa A., Helisalmi S., Lehtovirta M., Hänninen T., and Soininen H., 2005, Estrogen receptor beta gene variants are
associated with increased risk of Alzheimer's disease in women, European journal of human genetics, 13: 1000-1006
P
Mid:15944651
Poliseno L., Salmena L., Zhang J., Carver B., Haveman W.J., and Pandolfi P.P., 2010, A coding-independent function of gene and pseudogene mRNAs regulates
tumour biology, Nature, 465: 1033-1038
P
Mid:20577206 PMCid:PMC3206313
Quagliata L., Matter M.S., Piscuoglio S., Arabi L., Ruiz C., Procino A., Kovac M., Moretti F., Makowska Z., and Boldanova T., 2014, Long noncoding RNA
HOTTIP/HOXA13 expression is associated with disease progression and predicts outcome in hepatocellular carcinoma patients, Hepatology, 59: 911-923
P
Mid:24114970 PMCid:PMC3943759
Reddy P.H., 2013, Is the mitochondrial outermembrane protein VDAC1 therapeutic target for Alzheimer's disease?, Biochimica et Biophysica Acta
(BBA)-Molecular Basis of Disease, 1832: 67-75
P
Mid:22995655 PMCid:PMC3518645
Safran M., Dalah I., Alexander J., Rosen N., Stein T.I., Shmoish M., Nativ N., Bahir I., Doniger T., and Krug H., 2010, GeneCards Version 3: the human gene
integrator, Database, 2010: baq020
P
Mid:20689021 PMCid:PMC2938269
Sharan R., Ulitsky I., and Shamir R., 2007, Network
based prediction of protein function, Molecular systems biology, 3: 88
P
Mid:17353930 PMCid:PMC1847944
1...,2,3,4,5,6,7,8,9,10,11 13,14
Powered by FlippingBook