Molecular Plant Breeding 2015, Vol.6, No.16, 1
-
13
12
for the construction of dendrogram using the UPGMA
(Unweighted Pair Group Method with Arithmetic
Averages) algorithm using the software, NTSYS-pc
(version 2.1, Rohlf, 1998).
Authors Contribution
MS designed all experiments, carried out the major work and
prepared Manuscript. KS carried out the validation assays of
markers, KG developed microsatellite enriched library, BV
participated in the data analysis, TGK helped in Nicotiana
species diversity analysis and BU participated in data and
statistical analysis. All authors read and approved the final
manuscript.
Acknowledgements
MSM greatly acknowledge the support and financial assistance
of Director, CTRI for carrying out the work.
References
Acquadro A., Portis E., and Lanteri S., 2003, Isolation of microsatellite loci
in artichoke (
Cynara cardunculus
L. var.
scolymus
), Molecular
Ecology Notes, 3(1): 37-39
Allendorf F.W., and Luikart G., 2007, Conservation and the Genetics of
Populations, Blackwell Publishing, Maden
Barandalla L., Galarreta R., Rios D., and Ritter E., 2006, Molecular analysis
of local potato cultivars from Tenerife Island using microsatellite
markers, Euphytica, 152(2): 283-291
Behera T.K., Sharma P., Singh B.K., Kumar G., Kumar R., Mohapatra T.,
and Singh N.K., 2006, Assessment of genetic diversity and species
relationships in eggplant (
Solanum melongena
L.) using STMS
markers, Scientia Horticulturae, 107(4): 352-357
Bindler G., Hoeven V.R., Gunduz I., Plieske J., Ganal M., Rossi L., Gadani
F., and Donini P., 2007, A microsatellite marker based linkage map of
tobacco, Theoretical and Applied Genetics, 114(2): 341-349
Bindler G., Plieske J., Bakaher N., Gunduz I., Ivanov N., Hoeven R.V.,
Ganal M., and Donini P., 2011, A high density genetic map of tobacco
(
Nicotiana tabacum
L.) obtained from large scale microsatellite marker
development, Theoretical and Applied Genetics, 123(2): 219-230
.
.
., and
., 2015, SSR
analysis of 38 genotypes of soybean (Glycine Max (L.) Merr.)
genetic diversity in India, Physiology and Molecular Biology of
Plants, 21(1): 109-115
Bowditch B.M., Albright D.G., Williams J.G.K., and Braun M.J., 1993, Use
of randomly polymorphic DNA in comparative genome studies,
Methods in Enzymology, 224: 294-309
Brookfield J.F.Y., 1996, A simple new method for estimating null allele
frequency from heterozygote deficiency, Molecular Ecology, 5(3):
453-455
Callen D.F., Thompson A.D., Shen Y., Phillips H.A., Richards R.L, Mulley
J.C., and Sutherland G.R., 1993, Incidence and origin of null alleles in
the (AC) n microsatellite markers, American Journal of Human
Genetics, 52(5): 922-927
Carputo D., Alioto D., Aversano R., Garramone R., Miraglia V., Villano C.,
and Frusciante L., 2013, Genetic diversity among potato species as
revealed by phenotypic resistances and SSR markers. Plant Genetic
Resource 21(1): 109-115
Dangl G.S., Woeste K., Ardhya M.K., Koehmstedt A., and Simon C., 2005,
Characterization of 14 microsatillete markers for genetic analysis and
cultivar identification of walnut, Journal of the American Society for
Horticultural Science, 130: 348-354
Degani C., Rowland L.J., Levi A., Hortynski J.A., and Gelletta G.J., 1998,
DNA fingerprinting of strawberry (
Fragaria xananassa
) cultivars using
randomly amplified polymorphic DNA (RAPD) markers, Euphytica,
102: 247-253
Gaitan-Solis E., Duque M.C., Edwards K.J., and Tohme., 2002, Microsatellite
repeats in common bean (
Phaseolus vulgaris)
, Crop Science, 42(6):
2128-2136
fi
Gupta P.K., Balyan H.S., Sharma P.C., and Ramesh B., 1996, Microsatellites
in plants: a new class of molecular markers, Current Science, 45(1):
45-54
Hughes P.W., Jaworski A.F., Davis C.S., Aitken S.M., and Simons A.M.,
2014, Development of polymorphic microsatellite markers for Indian
tobacco,
Lobelia inflata
(Campanulaceae), Applications in Plant
Sciences, 2(4): 1300096
Khan H., Akter J., Islam M.S., Sajib A.A., Ashraf N., Haque S., and Khan
H., 2008, Microsatellite markers for determining genetic identities and
genetic diversity among jute cultivars, Australian Journal of crop
science, 1(3): 97-107
Khan M.Q., and Narayan R.K.J., 2007, Phylogenetic diversity and
relationships among species of genus Nicotiana using RAPDs analysis,
African Journal of Biotechnology, 6(2): 148-162
Lagercrantz U., Ellegren H., and Andersson L., 1993, The abundance of
various polymorphic microsatellite motifs differs between plants and
vertebrates, Nucleic Acids Research, 21(5): 1111-1115
Lowe A.J., Moule C., Trick M., and Edwards K.J., 2004, Efficient largescale
development of microsatellites for marker and mapping applications in
Brassica crop species, Theoretical for Applied Genetics, 108(6):
1103-1112
Maguire T.L., Edwards K.J., Saenger P., and Henry R., 2000, Characterization and
analysis of microsatellite loci in a mangrove species, Avicennia marina
(Forsk.) Vierh. (Avicenniaceae), Molecular Ecology, 9(11): 1853-1862
Maniruzzaman., Talukder Z.A., Rohman S., Begum F., and Amiruzzaman
M., 2014, Polymorphism study in Barley (
Hordeum Vulgare
) genotypes
using microsatellite (SSR) markers, Bangladesh Journal of Agriculture
Research, 39(1): 33-45
Maranho R.C., Augusto R., Mangolin C.A., and Machado M.F.P.S., 2014,
Use of differential levels of mean observed heterozygosity in
microsatellite loci of commercial varieties of sugarcane (Saccharum
spp), Genetics and Molecular Research, 13 (4): 10130-10141
Marinoni D., Akkak A., Bounous G., Edwards K.J., and Botta R., 2003,
Development and characterization of microsatellite markers in
Castanea
sativa
(Mill.), Molecular Breeding, 11(2): 127-136
Mc Couch S.R., Teytelman L., Xu Y., Lobos K.B., Clare K., Walton M., Fu
B., Maghirang R., Li Z., Xing Y., Zhang Q., Kano I., Yano M.,
Fjellstrom R., De Clerk G., Schneider D., Cartinhour S., Ware D and
Stein L., 2002, Development and mapping of 2240 new SSR markers
for rice (
Oryza sativa
L.), DNA Research, 9(6): 199-207
.A
A.B
S.A., an
T.K., 2015, Identification
and analysis of novel salt responsive candidate gene based SSRs
(cgSSRs) from rice (
Oryza sativa
L.), BMC plant Biology, 15: 122
Moon H.S., Nicholson J.S., and Lewis R.S., 2008, Use of transferable
Nicotiana tabacum
L. microsatellite markers for investigating genetic
diversity in the genus Nicotiana, Genome, 51(8): 547-599
Murray M.G., and Thompson W.F., 1980, Rapid isolation of high-molecular-
