Computational Molecular Biology, 2018, Vol.8, No.1, 1-13
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Min X.J., 2013, ASFinder: a tool for genome-wide identification of alternatively spliced transcripts from EST-derived sequences, International J.
Bioinformatics Res. Appl., 9: 221-226
PMid:23649736
Min X.J., 2017, Comprehensive cataloging and analysis of alternative splicing in maize, Computational Molecular Biology, 7(1): 1-11
Min X.J., Butler G., Storms R., and Tsang A., 2005a, OrfPredictor: predicting protein-coding regions in EST-derived sequences, Nucleic Acids Res., 33:
W677-680
PMid:15980561 PMCid:PMC1160155
Min X.J., Butler G., Storms R., and Tsang A., 2005b, TargetIdentifier: a web server for identifying full-length cDNAs from EST sequences, Nucleic Acids Res.,
33: W669-W672
PMid:15980559 PMCid:PMC1160197
Min X.J., Powell B., Braessler J., Meinken J., Yu F., and Sablok G., 2015, Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops,
BMC Genomics, 16: 721
PMid:26391769 PMCid:PMC4578763
Panahi B., Abbaszadeh B., Taghizadeghan M., and Ebrahimie E., 2014, Genome-wide survey of alternative splicing in Sorghum bicolor, Physiol Mol Biol
Plants, 20: 323-329
PMid:25049459 PMCid:PMC4101146
Reddy A.S.N., Marquez Y., Kalyna M., and Barta A., 2013, Complexity of the alternative splicing landscape in plants, Plant Cell, 25: 3657-3683
PMid:24179125 PMCid:PMC3877793
Rice P., Longden I., and Bleasby A., 2000, EMBOSS: The European Molecular Biology Open Software Suite, Trends Genetics, 16: 276-277
Sablok G., Gupta P.K., Baek J.M., Vazquez F., and Min X.J., 2011, Genome-wide survey of alternative splicing in the grass Brachypodium distachyon: an
emerging model biosystem for plant functional genomics, Biotechnology Letters, 33: 629-636
PMid:21107652
Sablok G., Powell B., Braessler J., Yu F., and Min X.J., 2017, Comparative landscape of alternative splicing in fruit plants, Current Plant Biology
Staiger D., and Brown J.W., 2013, Alternative splicing at the intersection of biological timing, development, and stress responses, Plant Cell, 25: 3640-3656
PMid:24179132 PMCid:PMC3877812
Stamm S., Ben-Ari S., Rafalska I., Tang Y.H., Zhang Z.Y., Toiber D., Thanaraj T.A., and Soreq H., 2005, Function of alternative splicing, Gene, 344: 1-20
PMid:15656968
Syed N.H., Kalyna M., Marquez Y., Barta A., and Brown J.W.S., 2012, Alternative splicing in plants-coming of age, Trends Plant Sci., 17: 616-623
PMid:22743067 PMCid:PMC3466422
Thatcher S.R., Danilevskaya O.N., Meng X., Beatty M., Zastrow-Hayes G., Harris C., Allen B.V., Habben J., and Li B., 2016, Genome-wide analysis of
alternative splicing during development and drought stress in maize, Plant Physiology, 170: 586-599
PMid:26582726 PMCid:PMC4704579
Thatcher S.R., Zhou W., Leonard A., Wang B.B., Beatty M., Zastrow-Hayes G., Zhao X.Y., Baumgarten A., and Li B., 2014, Genome-wide analysis of
alternative splicing in Zea mays: landscape and genetic regulation, Plant Cell, 26: 3472-3487
PMid:25248552 PMCid:PMC4213170
VanBuren R., Walters B., and Ming R. et al., 2013, Analysis of expressed sequence tags and alternative splicing genes in sacred lotus (
Nelumbo nucifera
Gaertn.), Plant Omics J., 6: 311-317
Vitulo N., Forcato C., and Carpinelli E.C. et al., 2014, A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue,
stress condition and genotype, BMC Plant Boil, 14: 99
PMid:24739459 PMCid:PMC4108029
Wai C.M., Powell B., Ming R., and Min X.J., 2016, Analysis of alternative splicing landscape in pineapple (
Ananas comosus
), Tropical Plant Biology, 9:
150-160
