CMB-2018v8n1 - page 12

Computational Molecular Biology, 2018, Vol.8, No.1, 1-13
http://cmb.biopublisher.ca
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Table 4 Gene Ontology classification of molecular functions of gene products in the whole set of assembled transcripts and in
isoforms generated by alternatively spliced genes in cotton
GO ID GO Description Total AS AS (%)
GO:0005488 binding 9315 4254 45.7
GO:0003824 catalytic activity 5984 2644 44.2
GO:0000166 nucleotide binding 3704 1648 44.5
GO:0016740 transferase activity 3682 1730 47.0
GO:0016787 hydrolase activity 3236 1446 44.7
GO:0005515 protein binding 2614 1318 50.4
GO:0003677 DNA binding 2174 1112 51.1
GO:0003723 RNA binding 1836 792 43.1
GO:0003676 nucleic acid binding 1697 847 49.9
GO:0005215 transporter activity 1254 579 46.2
GO:0016301 kinase activity 1188 652 54.9
GO:0003700 DNA binding transcription factor activity 1150 643 55.9
GO:0005198 structural molecule activity 819 245 29.9
GO:0004518 nuclease activity 674 285 42.3
GO:0030234 enzyme regulator activity 387 159 41.1
GO:0004871 signal transducer activity 359 203 56.5
GO:0030246 carbohydrate binding 309 118 38.2
GO:0008289 lipid binding 291 146 50.2
GO:0008135 translation factor activity, RNA binding 267 84 31.5
GO:0004872 receptor activity 232 138 59.5
GO:0003682 chromatin binding 158 84 53.2
GO:0003774 motor activity 134 77 57.5
GO:0005102 receptor binding 125 51 40.8
GO:0045182 translation regulator activity 8 6 75.0
GO:0019825 oxygen binding 7 3 42.9
Total 41604 19264 46.3
Table 5 Gene Ontology classification of biological processes of gene products in the whole set of assembled transcripts and in
isoforms generated by alternatively spliced genes in cotton
GO ID GO Description Total AS AS (%)
GO:0009987 cellular process 12460 5686 45.6
GO:0008152 metabolic process 10791 4815 44.6
GO:0009058 biosynthetic process 5783 2625 45.4
GO:0006139 nucleobase-containing compound metabolic process 5186 2419 46.6
GO:0006950 response to stress 3007 1457 48.5
GO:0016043 cellular component organization 2995 1454 48.5
GO:0006810 transport 2405 1189 49.4
GO:0007275 multicellular organism development 2145 1134 52.9
GO:0009056 catabolic process 2033 889 43.7
GO:0007154 cell communication 1790 905 50.6
GO:0019538 protein metabolic process 1788 818 45.7
GO:0006464 cellular protein modification process 1769 924 52.2
GO:0007165 signal transduction 1726 868 50.3