Computational Molecular Biology, 2018, Vol.8, No.1, 1-13
8
Continued Table 3
PFam ID Total
AS
% Pfam
Pfam description
pfam00270 149
70
47.0 DEAD
DEAD/DEAH box helicase
pfam03514 147
46
31.3 GRAS
GRAS domain family
pfam00561 147
45
30.6 Abhydrolase_1
alpha/beta hydrolase fold
pfam00226 146
58
39.7 DnaJ
DnaJ domain
pfam00179 143
85
59.4 UQ_con
Ubiquitin-conjugating enzyme
pfam00854 139
44
31.7 PTR2
POT family
pfam13855 137
29
21.2 LRR_8
Leucine rich repeat
pfam04564 136
35
25.7 U-box
U-box domain
pfam01582 135
44
32.6 TIR
TIR domain
pfam01554 129
39
30.2 MatE
MatE
pfam00168 127
42
33.1 C2
C2 domain
pfam00295 127
30
23.6 Glyco_hydro_28
Glycosyl hydrolases family 28
pfam13839 124
29
23.4 PC-Esterase
GDSL/SGNH-like Acyl-Esterase family found
pfam00046 121
37
30.6 Homeobox
Homeobox domain
pfam01490 121
37
30.6 Aa_trans
Transmembrane amino acid transporter protein
pfam00005 120
37
30.8 ABC_tran
ABC transporter
pfam05699 119
53
44.5 Dimer_Tnp_hAT hAT family C-terminal dimerization
pfam04043 119
7
5.9
PMEI
Plant invertase/pectin methylesterase inhibitor
pfam00501 117
31
26.5 AMP-binding
AMP-binding enzyme
pfam00332 117
27
23.1 Glyco_hydro_17
Glycosyl hydrolases family 17
pfam10250 112
49
43.8 O-FucT
GDP-fucose protein O-fucosyltransferase
pfam00400 111
45
40.5 WD40
WD domain
pfam02362 110
47
42.7 B3
B3 DNA binding domain
pfam03195 110
19
17.3 DUF260
Protein of unknown function DUF260
pfam00085 107
33
30.8 Thioredoxin
Thioredoxin
pfam00230 106
35
33.0 MIP
Major intrinsic protein
pfam01501 106
28
26.4 Glyco_transf_8
Glycosyl transferase family 8
pfam00319 105
28
26.7 SRF-TF
SRF-type transcription factor (DNA-binding and
pfam03018 105
9
8.6
Dirigent
Dirigent-like protein
pfam00248 104
44
42.3 Aldo_ket_red
Aldo/keto reductase family
pfam13414 104
32
30.8 TPR_11
TPR repeat
pfam03151 103
28
27.2 TPT
Triose-phosphate Transporter family
pfam14226 103
25
24.3 DIOX_N
non-haem dioxygenase in morphine synthesis
pfam08263 103
20
19.4 LRRNT_2
Leucine rich repeat N-terminal domain
pfam01370 102
28
27.5 Epimerase
NAD dependent epimerase/dehydratase family
pfam07732 102
23
22.5 Cu-oxidase_3
Multicopper oxidase
pfam00170 101
32
31.7 bZIP_1
bZIP transcription factor
pfam03552 100
39
39.0 Cellulose_synt
Cellulose synthase
Total
57900 18218 31.5
Unique Pfam 3505 2454
Note: This is only a partial list; The information for accessing the complete list can be found in the main text
