 
          Computational Molecular Biology 2016, Vol.6, No.4, 1-12
        
        
        
          7
        
        
          Continuing Table 2
        
        
          Mt
        
        
          Nuc
        
        
          Specie
        
        
          Total
        
        
          HLS
        
        
          LS
        
        
          Cyt
        
        
          Plasm
        
        
          mem
        
        
          non-m
        
        
          mem
        
        
          non-m
        
        
          Sec(%)
        
        
          Ichthyophthirius multifiliis
        
        
          8119
        
        
          165
        
        
          67
        
        
          762
        
        
          336
        
        
          559
        
        
          858
        
        
          820
        
        
          4771
        
        
          2.0
        
        
          Oxytricha trifallax
        
        
          24577
        
        
          770
        
        
          205
        
        
          1498
        
        
          1631
        
        
          452
        
        
          1373
        
        
          1742
        
        
          17191
        
        
          3.1
        
        
          Paramecium tetraurelia
        
        
          39936
        
        
          1509
        
        
          367
        
        
          2569
        
        
          1961
        
        
          1304
        
        
          3552
        
        
          2207
        
        
          27495
        
        
          3.8
        
        
          Stylonychia lemnae
        
        
          20784
        
        
          817
        
        
          210
        
        
          1379
        
        
          1379
        
        
          471
        
        
          1289
        
        
          1389
        
        
          14206
        
        
          3.9
        
        
          Tetrahymena thermophila
        
        
          27741
        
        
          1541
        
        
          454
        
        
          1275
        
        
          1336
        
        
          1365
        
        
          2481
        
        
          2688
        
        
          16630
        
        
          5.6
        
        
          Alveolata; Perkinsea
        
        
          Perkinsus marinus
        
        
          23241
        
        
          1406
        
        
          415
        
        
          6525
        
        
          1823
        
        
          234
        
        
          4333
        
        
          81
        
        
          7927
        
        
          6.0
        
        
          Amoebozoa; Archamoebae
        
        
          Entamoeba dispar
        
        
          8679
        
        
          386
        
        
          109
        
        
          1349
        
        
          431
        
        
          362
        
        
          657
        
        
          237
        
        
          5472
        
        
          4.4
        
        
          Entamoeba histolytica HM-1:IMSS-A
        
        
          6315
        
        
          281
        
        
          70
        
        
          845
        
        
          370
        
        
          244
        
        
          416
        
        
          165
        
        
          4120
        
        
          4.4
        
        
          Entamoeba histolytica HM-1:IMSS-B
        
        
          6292
        
        
          269
        
        
          67
        
        
          902
        
        
          363
        
        
          229
        
        
          415
        
        
          160
        
        
          4049
        
        
          4.3
        
        
          Entamoeba histolytica HM-3:IMSS
        
        
          7331
        
        
          339
        
        
          90
        
        
          1077
        
        
          419
        
        
          274
        
        
          526
        
        
          186
        
        
          4656
        
        
          4.6
        
        
          Entamoeba histolytica KU27
        
        
          7398
        
        
          357
        
        
          81
        
        
          1157
        
        
          424
        
        
          265
        
        
          560
        
        
          185
        
        
          4653
        
        
          4.8
        
        
          Entamoeba invadens IP1
        
        
          9857
        
        
          630
        
        
          189
        
        
          2323
        
        
          550
        
        
          217
        
        
          901
        
        
          352
        
        
          5403
        
        
          6.4
        
        
          Entamoeba nuttalli
        
        
          6223
        
        
          283
        
        
          80
        
        
          891
        
        
          366
        
        
          240
        
        
          434
        
        
          149
        
        
          4020
        
        
          4.5
        
        
          Amoebozoa; Discosea
        
        
          Acanthamoeba castellanii str. Neff
        
        
          14944
        
        
          952
        
        
          291
        
        
          3844
        
        
          1160
        
        
          197
        
        
          2842
        
        
          99
        
        
          5162
        
        
          6.4
        
        
          Amoebozoa; Mycetozoa
        
        
          Dictyostelium discoideum
        
        
          13125
        
        
          719
        
        
          188
        
        
          1711
        
        
          635
        
        
          609
        
        
          1246
        
        
          416
        
        
          7223
        
        
          5.5
        
        
          Dictyostelium fasciculatum
        
        
          12210
        
        
          729
        
        
          249
        
        
          1359
        
        
          904
        
        
          265
        
        
          1163
        
        
          363
        
        
          7110
        
        
          6.0
        
        
          Dictyostelium purpureum
        
        
          12353
        
        
          783
        
        
          227
        
        
          1543
        
        
          706
        
        
          402
        
        
          1091
        
        
          501
        
        
          7363
        
        
          6.3
        
        
          Polysphondylium pallidum
        
        
          12451
        
        
          812
        
        
          216
        
        
          1492
        
        
          831
        
        
          271
        
        
          1193
        
        
          358
        
        
          7271
        
        
          6.5
        
        
          Apusozoa; Apusomonadidae
        
        
          Thecamonas trahens ATCC 50062
        
        
          10606
        
        
          500
        
        
          311
        
        
          3035
        
        
          1497
        
        
          119
        
        
          2056
        
        
          25
        
        
          1949
        
        
          4.7
        
        
          Cryptophyta; Pyrenomonadales
        
        
          Guillardia theta CCMP2712
        
        
          24987
        
        
          2268
        
        
          679
        
        
          4572
        
        
          2017
        
        
          310
        
        
          4883
        
        
          183
        
        
          10082
        
        
          9.1
        
        
          Fornicata; Diplomonadida
        
        
          Giardia intestinalis
        
        
          30589
        
        
          735
        
        
          539
        
        
          7798
        
        
          1798
        
        
          226
        
        
          5172
        
        
          221
        
        
          12528
        
        
          2.4
        
        
          Spironucleus salmonicida
        
        
          8104
        
        
          62
        
        
          103
        
        
          1175
        
        
          398
        
        
          214
        
        
          1084
        
        
          287
        
        
          4853
        
        
          0.8
        
        
          Haptophyceae
        
        
          Emiliania huxleyi
        
        
          36436
        
        
          3111
        
        
          1733
        
        
          8517
        
        
          3003
        
        
          703
        
        
          12655
        
        
          66
        
        
          5361
        
        
          8.5
        
        
          Chrysochromulina sp. CCMP291
        
        
          16813
        
        
          936
        
        
          481
        
        
          4937
        
        
          1605
        
        
          262
        
        
          4857
        
        
          36
        
        
          3036
        
        
          5.6
        
        
          Heterolobosea; Schizopyrenida
        
        
          Naegleria gruberi
        
        
          15736
        
        
          675
        
        
          204
        
        
          1909
        
        
          1362
        
        
          323
        
        
          1310
        
        
          549
        
        
          9619
        
        
          4.3
        
        
          Kinetoplastida; Bodonidae
        
        
          Bodo saltans
        
        
          18292
        
        
          1187
        
        
          657
        
        
          3009
        
        
          2306
        
        
          283
        
        
          4502
        
        
          87
        
        
          5263
        
        
          6.5
        
        
          Kinetoplastida; Trypanosomatidae
        
        
          Angomonas deanei
        
        
          14609
        
        
          325
        
        
          333
        
        
          3921
        
        
          1136
        
        
          309
        
        
          3169
        
        
          148
        
        
          5452
        
        
          2.2
        
        
          Leishmania infantum
        
        
          8311
        
        
          207
        
        
          177
        
        
          1685
        
        
          800
        
        
          209
        
        
          2621
        
        
          42
        
        
          2264
        
        
          2.5
        
        
          Leishmania major
        
        
          8426
        
        
          224
        
        
          220
        
        
          1737
        
        
          838
        
        
          216
        
        
          2663
        
        
          40
        
        
          2223
        
        
          2.7
        
        
          Leishmania mexicana
        
        
          8239
        
        
          192
        
        
          181
        
        
          1707
        
        
          789
        
        
          194
        
        
          2583
        
        
          43
        
        
          2271
        
        
          2.3
        
        
          Leishmania panamensis
        
        
          7754
        
        
          160
        
        
          175
        
        
          1576
        
        
          680
        
        
          189
        
        
          2489
        
        
          38
        
        
          2226
        
        
          2.1
        
        
          Leptomonas pyrrhocoris
        
        
          9298
        
        
          222
        
        
          225
        
        
          1981
        
        
          936
        
        
          227
        
        
          2783
        
        
          54
        
        
          2647
        
        
          2.4
        
        
          Leptomonas seymouri
        
        
          8500
        
        
          170
        
        
          187
        
        
          1680
        
        
          778
        
        
          205
        
        
          2676
        
        
          40
        
        
          2546
        
        
          2.0
        
        
          Phytomonas sp. isolate EM1
        
        
          6361
        
        
          94
        
        
          101
        
        
          1263
        
        
          488
        
        
          126
        
        
          1645
        
        
          55
        
        
          2482
        
        
          1.5
        
        
          Phytomonas sp. isolate Hart1
        
        
          6442
        
        
          112
        
        
          98
        
        
          1162
        
        
          462
        
        
          127
        
        
          1636
        
        
          74
        
        
          2675
        
        
          1.7
        
        
          Strigomonas culicis
        
        
          10048
        
        
          295
        
        
          286
        
        
          2529
        
        
          876
        
        
          258
        
        
          2814
        
        
          64
        
        
          2827
        
        
          2.9
        
        
          Trypanosoma brucei brucei
        
        
          9381
        
        
          726
        
        
          312
        
        
          1910
        
        
          940
        
        
          261
        
        
          2567
        
        
          41
        
        
          2542
        
        
          7.7
        
        
          Trypanosoma brucei gambiense
        
        
          9786
        
        
          408
        
        
          322
        
        
          1773
        
        
          1142
        
        
          411
        
        
          2868
        
        
          76
        
        
          2598
        
        
          4.2