Cotton Genomics and Genetics 2016, Vol.7, No.2, 1-23
23
Continuing Supplementary Table 1
Suvin control vs stress
Small RNA sequence identified in this study
Corresponding conserved
miRNA family (obtained
from miRBase)
Reads (RPKM)*
Differential expression in
fold change#
Suvin-C
Suvin-WS
UAAGCUCAGGAGGGAUAGCGCC
cpa-miR390b
16.02649
14.69052
2.524 down
AUCAUGCGAUCCCUUCGGAAU
mdm-miR393f
8.49913
10.04346
2.916 up
UUCCACAGCUUUCCUGAACUG
cpa-miR396
9.15121
8.10486
2.065 down
UUCCACAGCUUUCUUCGAACUG
cpa-miR396
10.28763
8.7258
2.952 down
UCAUUGAGUGCAGCGUUGAUGAA
ppe-miR397
12.01996
10.80369
2.323 down
UGUGUUCUCAGGUCACCCCUU
cme-miR398b
10.01371
6.93494
8.448 down
UCUUUCCUACUCCUCCAUUCC
pde-miR482a
13.73974
12.37331
2.578 down
UCUUUCCACUCCUCCCAUUCC
pde-miR482a
10.27674
8.4585
3.526 down
UCUUUCCUACUCCUCCCGUUCC
pde-miR482a
9.01013
7.96294
2.066 down
UCUUUCCUACUCCUCCUAUUCC
pde-miR482a
7.63251
6.45996
2.254 down
UCUUUCCUACUCCUCCCACUCC
pde-miR482a
8.66363
7.61739
2.065 down
UCUUUCCUACUCCUCCCAUCCC
pde-miR482a
10.84457
13.15511
4.960 up
UCCUUCCUACUCCUCCCAUUCC
pde-miR482a
14.37677
12.82767
2.926 down
UGACAGCGAGAGAGAGCACGU
mes-miR535a
9.15121
7.84183
2.478 down
UGACAACGAGAGAGAUCACGU
mes-miR535a
8.01371
9.3612
2.544 up
UUCAUUGUCUGUUCGACCUGA
mdm-miR858
10.4106
8.39437
4.045 down
UUUCGUUGUCUGUUCGACCUUGA
ath-miR858b
13.79095
11.76369
4.076 down
GUCCUUGGGGUGCAGAUUACCU
lja-miR2111-3p
11.13773
7.45279
12.861 down
ACUUUGAACUGGAUUUGCCGA
ghr-miR2949c
12.90947
11.15326
3.378 down
CCAGUCUUGCAUUUAUUCCACUU
api-miR-3027
9.83355
4.80369
32.669 down
UGAGAUCUUGAUAAACUCGCCUU
api-miR-3050
9.36789
4.80369
23.656 down
UGAACUGGGUUUGUUGGCUGCU
ghr-miR3476-5p
12.49091
10.91222
2.986 down
UUCAGAAACCAUCCUUCCUUC
ghr-miR7505
13.66715
14.90432
2.357 up
* RPKM: Reads per kilo base per million
#
fold change in up or down regulation
