Cotton Genomics and Genetics 2016, Vol.7, No.2, 1-23
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Supplementary Table 1 Conserved miRNA families that were differentially expressed in two cotton accessions under two different
water regimes
Suvin control vs stress
Small RNA sequence identified in this study
Corresponding conserved
miRNA family (obtained
from miRBase)
Reads (RPKM)*
Differential expression in
fold change#
Suvin-C
Suvin-WS
UGAGAUCAUUGUGAAAGCUAAUU
hme-bantam
9.90631
4.80369
34.358 down
UAUCACAGCCAGCUUUGUAUGAGCG api-miR-2b
8.24759
3.6834
23.656 down
UCAGUCUUUUCUCUCUCCUAU
hme-miR-14
10.75067
4.93494
56.326 down
GCUCUCUAUGCUCCUGUCAUCA
stu-miR156d-3p
7.62466
4.86782
6.759 down
GCUCUCUAUGCCUCUGUCAUCA
stu-miR156d-3p
7.74014
3.86782
14.644 down
GCUCUCUAUGCUUCUGUCACCA
stu-miR156d-3p
9.89768
7.95529
3.843 down
UUGGCAGAAGAUAGAGAGCAC
lus-miR156h
8.42874
7.10486
2.503 down
GCUCUCUAGCUUCUGUCAUCACA
aly-miR157b-3p
13.87493
11.58505
4.890 down
AGCUGCUUGGCUAUGGAUCCC
gma-miR159d
9.49913
6.5199
7.885 down
GAGCUGCUGAGCUAUGGAUCCC
gma-miR159d
12.88205
11.63601
2.371 down
GCGUAUGAGGAGCCAAGCAUAU
stu-miR160a-3p
11.29709
9.8451
2.735 down
UGCCUGGCUCCCUGCAUGCCAA
nta-miR160d
9.39725
4.86782
23.093 down
UGCCUGUCUCCCUGUAUGCCA
cpa-miR160f-5p
8.63038
6.74229
3.701 down
UGCCUGGCUCCCUGUACGCCA
cpa-miR160f-5p
9.10681
5.5199
12.016 down
UGCCUGGCUCCCUGUAUACCA
cpa-miR160f-5p
10.17329
6.74472
10.767 down
UCGCCUGGCUCCCUGUAUGCCA
ppt-miR160i
10.37992
7.45279
7.605 down
UGGAGGCAGCGGUUCAUCGAUC
csi-miR162-5p
10.74014
9.03775
3.254 down
UGCACGUGCUCCCUUUCUCCAAC
cpa-miR164e
9.46742
6.61105
7.241 down
CACGUGCUCCCCUUCUCCACCGA
zma-miR164g-3p
12.65505
10.51794
4.398 down
GGAAUGUUGUCUGGCUCGAGGA
stu-miR166a-5p
12.80125
10.52603
4.840 down
GGAAUGUUGUCUGGACCGGGG
bdi-miR166b-5p
11.49913
8.68982
7.009 down
GGAAUGUUGUUUGGCUCGAGG
stu-miR166c-5p
9.59867
5.5199
16.897 down
GGAAUGUUGUUUGGCCCGAGGUC
stu-miR166c-5p
11.28845
7.26312
16.283 down
UCGGACCAGGCUUCAAUUCCC
bdi-miR166h-3p
11.43773
9.86567
2.973 down
UCUCGGACCAGGCCUCAUUCCCS
gma-miR166k
11.97557
10.38866
3.004 down
