Basic HTML Version
分子植物育种
(
网络版
)
Fenzi Zhiwu Yuzhong (Online)
1188
Marchler-Bauer A., Anderson J.B., Chitsaz F., Derbyshire
M.K., DeWeese-Scott C., Fong J.H., Geer L.Y., Geer R.C.,
Gonzales N.R., Gwadz M., He S., Hurwitz D.I., Jackson
J.D., Ke Z., Lanczycki C.J., Liebert C.A., Liu C., Lu F.,
Lu S., Marchler G.H., Mullokandov M., Song J.S.,
Tasneem A., Thanki N., Yamashita R.A., Zhang D.,
Zhang N., and Bryant S.H., 2009, CDD: specific
functional annotation with the conserved domain database,
Nucleic Acids Res., 37(Database issue): D205- D210
http://dx.doi.org/10.1093/nar/gkn845
PMid:18984618 PMCid:PMC2686570
Marchler-Bauer A., and Bryant S.H., 2004, CD-Search: protein
domain annotations on the fly, Nucleic Acids Res.,
32(Web Server issue): W327- W331
Marchler-Bauer A., Lu S., Anderson J.B., Chitsaz F.,
Derbyshire M.K., DeWeese-Scott C., Fong J.H., Geer
L.Y., Geer R.C., Gonzales N.R., Gwadz M., Hurwitz D.I.,
Jackson J.D., Ke Z., Lanczycki C.J., Lu F., Marchler G.H.,
Mullokandov M., Omelchenko M.V., Robertson C.L.,
Song J.S., Thanki N., Yamashita R.A., Zhang D., Zhang
N., Zheng C., and Bryant S.H., 2011, CDD: a conserved
domain database for the functional annotation of proteins,
Nucleic Acids Res., 39(Database issue): D225- D229
http://dx.doi.org/10.1093/nar/gkq1189
PMid:21109532 PMCid:PMC3013737
Mccarthy E.M., and Mcdonald J.F., 2003, LTR_STRUC: a
novel search and identification program for LTR
retrotransposons, Bioinformatics, 19(3): 362-367
http://dx.doi.org/10.1093/bioinformatics/btf878
PMid:12584121
Morgante M., De Paoli E., and Radovic S., 2007, Transposable
elements and the plant pan-genomes, Curr. Opin. Plant
Biol., 10(2): 149-155
http://dx.doi.org/10.1016/j.pbi.2007.02.001
PMid:17300983
Nesbitt T.C., and Tanksley S.D., 2002, Comparative
sequencing in the genus lycopersicon: implications for the
evolution of fruit size in the domestication of cultivated
tomatoes, Genetics, 162(1): 365-379
PMid:12242247 PMCid:PMC1462239
Ranc N., Mu-os S., Santoni S., and Causse M., 2008, A
clarified position for solanum
lycopersicum
var.
cerasiforme
in the evolutionary history of tomatoes
(solanaceae), BMC Plant Biology, 8: 130
http://dx.doi.org/10.1186/1471-2229-8-130
PMid:19099601 PMCid:PMC2657798
Rogers S.A., and Pauls K.P., 2000, Ty1-copia-like
retrotransposons of tomato (
Lycopersicon esculentum
Mill.), Genome, 43(5): 887-894
http://dx.doi.org/10.1139/g00-056
http://dx.doi.org/10.1139/gen-43-5-887
PMid:11081980
Roman A.C., Benitez D.A., Carvajal-Gonzalez J.M., and
Fernandez-Salguero P.M., 2008, Genome-wide B1
retrotransposon binds the transcription factors dioxin
receptor and Slug and regulates gene expression in vivo,
Proc. Natl. Acad. Sci., USA, 105(5): 1632-1637
http://dx.doi.org/10.1073/pnas.0708366105
PMid:18223155 PMCid:PMC2234196
Sabot F., and Schulman A.H., 2006, Parasitism and the
retrotransposon life cycle in plants: a hitchhiker's guide to
the genome, Heredity, 97(6): 381-388
http://dx.doi.org/10.1038/sj.hdy.6800903
PMid:16985508
SanMiguel P., Gaut B.S., Tikhonov A., Nakajima Y., and
Bennetzen J.L., 1998, The paleontology of intergene
retrotransposons of maize, Nat. Genet., 20(1): 43-45
http://dx.doi.org/10.1038/1695
PMid:9731528
SanMiguel P., Tikhonov A., Jin Y.K., Motchoulskaia N.,
Zakharov D., Melake-Berhan A., Springer P.S., Edwards
K.J., Lee M., Avramova Z., and Bennetzen J.L., 1996,
Nested retrotransposons in the intergenic regions of the
maize genome, Science, 274(5288): 765-768
http://dx.doi.org/10.1126/science.274.5288.765
PMid:8864112
Schnable P.S., Ware D., Fulton R.S., Stein6 J.C., Wei F.S.,
Pasternak S., Liang C.Z., Zhang J.W., Fulton L., Graves
T.A., Minx P., Reily A.D., Courtney L., Kruchowski S.S.,
Tomlinson C., Strong C., Delehaunty K., Fronick C.,
Courtney B., Rock S.M., Belter E., Du F.Y., Kim K.,
Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K.,
Jackson S.M., Gillam B., Chen W.Z., Yan L.,
Higginbotham J., Cardenas M., Waligorski J., Applebaum
E., Phelps L., Falcone J., Kanchi K., Thane T., Scimone
A., Thane N., Henke J., Wang T., Ruppert J., Shah N.,