许莹修
:
番茄基因组逆转座子的鉴定与演化分析
1187
分析,论文写作与修改。
致谢
本 研 究 得 到 江 苏 省 农 业 科 技 自 主 创 新 基 金
(CX(12)5037)
资助。
参考文献
Baucom R.S., Estill J.C., Chaparro C., Upshaw N., Jogi A.,
Deragon J.M., Westerman R.P., Sanmiguel P.J., and
Bennetzen J.L., 2009, Exceptional diversity, non-random
distribution, and rapid evolution of retroelements in the
B73 maize genome, PLoS Genet, 5(11): e1000732
http://dx.doi.org/10.1371/journal.pgen.1000732
PMid:19936065 PMCid:PMC2774510
Cheng X.D., Zhang D.F., Cheng Z.K., Keller B., and Ling H.Q.,
2009, A new family of Ty1-copia-like retrotransposons
originated in the tomato genome by a recent horizontal
transfer event, Genetics, 181(4): 1183-1193
http://dx.doi.org/10.1534/genetics.108.099150
PMid:19153256 PMCid:PMC2666490
Du J.C., Tian Z.X., Hans C.S., Laten H.M., Cannon S.B.,
Jackson S.A., Shoemaker R.C., and Ma J.X., 2010,
Evolutionary conservation, diversity and specificity of
LTR-retrotransposons in flowering plants: insights from
genome-wide analysis and multi-specific comparison,
Plant J., 63(4): 584-598
http://dx.doi.org/10.1111/j.1365-313X.2010.04263.x
PMid:20525006
Edgar R.C., 2004, MUSCLE: multiple sequence alignment
with high accuracy and high throughput, Nucleic Acids
Res., 32(5): 1792-1797
http://dx.doi.org/10.1093/nar/gkh340
PMid:15034147 PMCid:PMC390337
Finnegan D.J., 1989, Eukaryotic transposable elements and
genome evolution, Trends Genet., 5(4): 103-107
http://dx.doi.org/10.1016/0168-9525(89)90039-5
Girard L., and Freeling M., 1999, Regulatory changes as a
consequence of transposon insertion, Dev. Genet., 25(4):
291-296
http://dx.doi.org/10.1002/(SICI)1520-6408(1999)25:4<29
1::AID-DVG2>3.0.CO;2-5
Goulet C., Mageroy M.H., Lam N.B., Floystad A., Tieman
D.M., and Klee H.J., 2012, Role of an esterase in flavor
volatile variation within the tomato clade, Proc. Natl.
Acad. Sci., USA, 109(46): 19009-19014
http://dx.doi.org/10.1073/pnas.1216515109
PMid:23112200 PMCid:PMC3503167
Havecker E.R., Gao X., and Voytas D.F., 2004, The diversity
of LTR retrotransposons, Genome Biol., 5(6): 225
http://dx.doi.org/10.1186/gb-2004-5-6-225
PMid:15186483 PMCid:PMC463057
Hua-Van A., Le Rouzic A., Boutin T.S., Filée J., and Capy P.,
2011, The struggle for life of the genome's selfish
architects, Biol. Direct, 6: 19
http://dx.doi.org/10.1186/1745-6150-6-19
PMid:21414203 PMCid:PMC3072357
International Rice Genome Sequencing Project, 2005, The
map-based sequence of the rice genome, Nature,
436(7052): 793-800
http://dx.doi.org/10.1038/nature03895
PMid:16100779
Jiang N., Gao D., Xiao H., and van der Knaap E., 2009,
Genome organization of the tomato sun locus and
characterization of the unusual retrotransposon rider, Plant
J., 60(1): 181-193
http://dx.doi.org/10.1111/j.1365-313X.2009.03946.x
PMid:19508380
Kimura M., and Ohta T., 1972, On the stochastic model for
estimation of mutational distance between homologous
proteins, J. Mol. Evol., 2(1): 87-90
http://dx.doi.org/10.1007/BF01653945
PMid:4668865
Kumar A., and Bennetzen J.L., 1999, Plant Retrotransposons,
Annu. Rev. Genet., 33: 479-532
http://dx.doi.org/10.1146/annurev.genet.33.1.479
PMid:10690416
Ma J., Devos K.M., and Bennetzen J.L., 2004, Analyses of
LTR-retrotransposon structures reveal recent and rapid
genomic DNA loss in rice, Genome Res., 14(5): 860-869
http://dx.doi.org/10.1101/gr.1466204
PMid:15078861 PMCid:PMC479113
Ma J., and Jackson S.A., 2006, Retrotransposon accumulation
and satellite amplification mediated by segmental
duplication facilitate centromere expansion in rice,
Genome Res., 16(2): 251-259
http://dx.doi.org/10.1101/gr.4583106
PMid:16354755 PMCid:PMC1361721