Molecular Plant Breeding 2015, Vol.6, No.18, 1
-
8
7
segregating sites (Watterson 1975) were calculated.
Tajima’s
D
(1989), Fu and Li’s (1993) and Fu’s Fs
(1997) neutrality tests were conducted by using
LDnaSP v. 4.0. Tajima’s D test was calculated for each
locus and reflects the difference between π and θ
W
. Fu
and Li’s and Fu’s Fs tests were computed without
outgroup.
Dendrograms were constructed based on the distance
matrix with the UPGMA method using the MEGA
program (Version 4, Tamura et al. 2007). Bootstrap
(1000 replications) analysis was performed to estimate
the confidence of the topology of the consensus tree.
4 Acknowledgements
This project was funded by the Technical Cooperation
Project on Korea-Africa Food and Agricultural
Cooperation Initiative between the Rural Development
Administration of the Republic of Korea and the
Republic of Tunisia. We are grateful to Dr I.S. Yoon
and Dr M.O. Byun for providing technical help during
the research.
References
Audigeos D., Buonamici A., belkadi L., Rymer P., Boshier D., Scotti-Saintagne
C., Vendramin G.G., and Scotti I., 2010, Aquaporins in the wild:
Natural genetic diversity and selective pressure in the
PIP
gene family
in five Neotropical tree species, BMC
Evolutionary Biology
, 10: 202
Banilas G., Karampelias M., Makariti I., Kourti A., and Hatzopoulos P.,
2010, The olive DGAT2 gene is developmentally regulated and shares
overlapping but distinct expression patterns with DGAT1,
Journal
of
Experimental Botany, 62: 521-532
Besnard G., and El Bakkali A., 2014, Sequence analysis of
single-copy genes in two wild olive subspecies: nucleotide diversity
and potential use for testing admixture. Genome, 57: 145–153
Bracci T., Busconi M., Fogher C., and Sebastiani L., 2011, Molecular
studies in olive (
Olea europaea
L.): overview on DNA markers
applications and recent advances in genome analysis, Plant Cell Reports, 30:
449–462
Chaumont F., Barrieu F., Wojcik E., Chrispeels M.J., and Jung R., 2001,
Aquaporins constitute a large and highly divergent protein family in
maize, Plant Physiology, 125: 1206–1215
Doyle J.J., and Doyle J.L., 1990, Isolation of plant DNA from fresh tissue,
Focus, 12: 13–15
Ercisli S., Ipek A., and Barut E., 2011, SSR Marker-Based DNA
Fingerprinting and Cultivar Identification of Olives (
Olea europaea
),
Biochemical Genetics, 49: 555–561
Fu Y.X., 1996, New Statistical Tests of Neutrality for DNA Samples from a
Population, Genetics, 143: 557
‐
570
Fu Y.X., 1997, Statistical Tests of Neutrality of Mutations against Population
Growth, Hitchhiking and Background Selection, Genetics,
147: 915
‐
925
Fu Y.X., and Li W.H., 1993, Statistical Tests of Neutrality of Mutations,
Genetics, 133: 693
‐
709
Fusari C.M., Lia V.V., Hopp H.E., Heinz R.A., and Norma B Paniego N.B.,
2008, Identification of Single Nucleotide Polymorphisms and analysis
of Linkage Disequilibrium in sunflower elite inbred lines using the
candidate gene approach, BMC Plant Biology, 8: 7.
doi:10.1186/1471-2229-8-7
Gulsen O., S Kaymak S., Ozongun S., and Uzun A., 2010, Genetic analysis
of Turkish apple germplasm using peroxidase gene-based markers,
Scientia horticulturae, 125: 368–373
Hakim R.I., Grati-Kammoun N., Makhloufi E., and RebaïA., 2010,
Discovery and potential of SNP markers in characterization of Tunisian
olive germplasm, Diversity, 2: 17–27
Hall T.A., 1999, BioEdit: a user-friendly biological sequence alignment
editor and analysis program for Windows 95/98/NT,
Nucleic Acids
Symposium Series
, 41: 95–98
Hamman-Khalifa A., Castro A.J., Jiménez-Lόpez J.C., Rodríguez-García
M.I., and De Dios AlchéJ., 2008, Olive cultivar origin is a major cause
of polymorphism for Ole e 1 pollen allergen, BMC plant Biology, 8:10
Haralampidis k., Milioni D., Sanchez J., Baltrusch M., Heinz E., and
Hatzopoulos P., 1998, Temporal and transient expression of stearoyl-ACP
carrier protein desaturase gene during olive fruit development,
Journal
of Experimental Botany, 327: 1661–1669
Hatzopoulos P., Banilas G., Giannoulia K., Gazis F., Nikoloudakis N.,
Milioni D., and Haralampidis K., 2002, Breeding, molecular markers
and molecular biology of the olive tree,
European Journal of Lipid
Science
and
Technology
, 104: 574–586
Johanson U., Karlsson M., Johansson I., Gustavsson S., Sjovall S., Fraysse
L., Weig A.R., and Kjellbom P., 2001, The complete set of genes
encoding major intrinsic proteins in Arabidopsis provides a framework
for a new nomenclature for major intrinsic proteins in plants, Plant
Physiology, 126: 1358–1369
Martinelli F., and Tonutti P., 2012, Flavonoid metabolism and gene
expression in developing olive (
Olea europaea
L.) fruit, Plant
Biosystems, 146: 164-170
Nei M., and Li W.H., 1979, Mathematical model for studying genetic
variation in terms of restriction endonucleases, Proceedings of the
National Academy of Sciences of the United States of America, 76:
5269-5273
Riahi L., Zoghlami N., Dereeper A., Laucou V., Mliki A., and This P., 2013,
Single nucleotide polymorphism and haplotype diversity of the gene
NAC4 in grapevine,
Industrial Crops
and Products, 43: 718–724
Park W., Scheffler B.E., Bauer P.J., and Campbell B.T., 2010, Identification
of the family of aquaporin genes and their expression in upland cotton
(
Gossypium hirsutum
L.), BMC Plant Biology, 10: 142
doi:10.1186/1471-2229-10-142
Rosen S., and Skaletsky H., 2000, Primer3 on the WWW for general users
and for biologist programmers,
Methods
in
Molecular Biology
, 132:
365–386
Rozas J., Sanchez-Delbarrio J.C., Messeguer X., and Rozas R., 2003,
DnaSP DNA polymorphisme analyses by the coalescent and other
methods, Bioinformatics ,19: 2496–2497
Rugini E., and Baldoni L., 2004,
Olea europaea
olive. In: Biotechnology of
Fruit and Nut Crops. (Litz, RE, Ed.), CABI Publishing,Wallingford,
Oxon., UK, 404–428
Rugini E., De pace C., Gutiérrez-Pesce P., and Rosario M., 2011, wild
crop relatives: Genomic and breeding resources Temperate fruits: Olea