PlantSecKB: the Plant Secretome and Subcellular Proteome KnowledgeBase
            
            
              13
            
            
              PlantGDB: a resource for comparative plant genomics,
            
            
              Nucl. Acids Res., 36: D959-965
            
            
              http://dx.doi.org/10.1093/nar/gkm1041
            
            
              Emanuelsson O., Brunak S., von Heijne G., and Nielsen H.,
            
            
              2007, Locating proteins in the cell using TargetP, SignalP
            
            
              and related tools, Nat. Protoc., 2: 953-971
            
            
              http://dx.doi.org/10.1038/nprot.2007.131
            
            
              Emanuelsson O., Nielsen H., Brunak S., and von Heijne G.,
            
            
              2000, Predicting subcellular localization of proteins based
            
            
              on their N-terminal amino acid sequence, J. Mol. Biol.,
            
            
              300: 1005-1016
            
            
              http://dx.doi.org/10.1006/jmbi.2000.3903
            
            
              Finnie C., Andersen B., Shahpiri A., and Svensson B., 2011,
            
            
              Proteomes of the barley aleurone layer: A model system
            
            
              for plant signalling and protein secretion, Proteomics, 11:
            
            
              1595-1605
            
            
              http://dx.doi.org/10.1002/pmic.201000656
            
            
              Foresti O., and Denecke J., 2008, Intermediate organelles of the
            
            
              plant secretory pathway: identity and function, Traffic, 9:
            
            
              1599-1612
            
            
              http://dx.doi.org/10.1111/j.1600-0854.2008.00791.x
            
            
              Gillmor C.S., Lukowitz W., Brininstool G., Sedbrook J.C.,
            
            
              Hamann T., Poindexter P., and Somerville C., 2005,
            
            
              Glycosylphosphatidylinositol-anchored proteins are
            
            
              required for cell wall synthesis and morphogenesis in
            
            
              Arabidopsis, Plant Cell, 17:1128-1140
            
            
              http://dx.doi.org/10.1105/tpc.105.031815
            
            
              Greenbaum D., Luscombe N.M., Jansen R., Qian J., and
            
            
              Gerstein M., 2001, Interrelating different types of genomic
            
            
              data, from proteome to secretome: coming in on function,
            
            
              Genome Res., 11: 1463-1468
            
            
              http://dx.doi.org/10.1101/gr.207401
            
            
              Hathout Y., 2007, Approaches to the study of the cell secretome,
            
            
              Expert Rev. Proteomics, 4: 239-248
            
            
              http://dx.doi.org/10.1586/14789450.4.2.239
            
            
              Horton P., Park K.J., Obayashi T., Fujita N., Harada H.,
            
            
              Adams-Collier C.J., and Nakai K., 2007, WoLF PSORT:
            
            
              protein localization predictor. Nucleic acids res., 35(Web
            
            
              Server issue): W585-587
            
            
              Isaacson T., and Rose J.K.C., 2006, The plant cell wall
            
            
              proteome, or secretome, In Plant Proteomics, Annual Plant
            
            
              Reviews Series, edited by Finnie C., Blackwell Publishing,
            
            
              28:185-209
            
            
              Jamet E., Albenne C., Boudart G., Irshad M., Canut H., and
            
            
              Pont-Lezica R, 2008, Recent advances in plant cell wall
            
            
              proteomics, Proteomics, 8: 893-908
            
            
              http://dx.doi.org/10.1002/pmic.200700938
            
            
              Jones R.L., and Robinson D.G., 1989, Protein Secretion in
            
            
              Plants, Tansley Review No. 17, New Phytologist, 111:
            
            
              567-597
            
            
              http://dx.doi.org/10.1111/j.1469-8137.1989.tb02352.x
            
            
              Jung Y.H., Jeong S.H., Kim S.H., Singh R., Lee J.E., Cho Y.S.,
            
            
              Agrawal G.K., Rakwal R., and Jwa N.S., 2008, Systematic
            
            
              secretome analyses of rice leaf and seed callus
            
            
              suspension-cultured cells: workflow development and
            
            
              establishment of high-density two-dimensional gel
            
            
              reference maps, J. Proteome Res., 7: 5187-5210
            
            
              http://dx.doi.org/10.1021/pr8005149
            
            
              Käll L., Krogh A., and Sonnhammer E.L.L., 2007, Advantages
            
            
              of combined transmembrane topology and signal peptide
            
            
              prediction--the Phobius web server, Nucleic acids res.,
            
            
              35(Web Server issue): W429-432
            
            
              Kamoun S., 2009, The Secretome of Plant-Associated Fungi
            
            
              and Oomycetes, In: Deising V.H. (ed.), Plant Relationships,
            
            
              2
            
            
              nd
            
            
              Edition, The Mycota, Springer-Verlag, Berlin
            
            
              Heidelberg, pp 173-180
            
            
              Kim S.T., Kang Y.H., Wang Y., Wu J., Park Z.Y., Rakwal R.,
            
            
              Agrawal G.K., Lee S.Y., and Kang K.Y., 2009, Secretome
            
            
              analysis of differentially induced proteins in rice
            
            
              suspension-cultured cells triggered by rice blast fungus
            
            
              and elicitor, Proteomics, 9: 1302-1313
            
            
              http://dx.doi.org/10.1002/pmic.200800589
            
            
              Krause C., Richter S., Knöll C., and Jürgens G., 2013, Plant
            
            
              secretome - From cellular process to biological activity,
            
            
              Biochim. Biophys. Acta, 1834(11): 2429-2441
            
            
              Krogh A., Larsson B., von Heijne G., and Sonnhammer E.L.L.,
            
            
              2001, Predicting transmembrane protein topology with a
            
            
              hidden Markov model: Application to complete genomes,
            
            
              J. Mol. Biol., 305: 567-580
            
            
              http://dx.doi.org/10.1006/jmbi.2000.4315
            
            
              Kusumawati L., Imin N., and Djordjevic M.A., 2008,
            
            
              Characterization of the secretome of suspension cultures
            
            
              of Medicago species reveals proteins important for
            
            
              defense and development, J. Proteome Res., 7: 4508-4520
            
            
              http://dx.doi.org/10.1021/pr800291z
            
            
              Lopez-Casado G., Urbanowicz B.R., Damasceno C.M.B., and
            
            
              Rose J.K.C., 2008, Plant glycosyl hydrolases and biofuels:
            
            
              a natural marriage, Current Opinion Plant Biol., 11:
            
            
              329-337
            
            
              http://dx.doi.org/10.1016/j.pbi.2008.02.010
            
            
              Lum G., Vanburen R., Ming R., Min X.J., 2013, Secretome
            
            
              prediction and analysis in sacred lotus (
            
            
              
                Nelumbo nucifera
              
            
            
              
                Gaertn
              
            
            
              .), Tropical Plant Biol., 6:131-137
            
            
              http://dx.doi.org/10.1007/s12042-013-9121-5
            
            
              Lum G., and Min X.J., 2013, Bioinformatic protocols and the
            
            
              knowledge-base for secretomes in fungi, In: Gupta V.K.,
            
            
              Tuohy M.G., Ayyachamy M., Turner K.M. and
            
            
              O’Donovan A. (eds.), Laboratory Protocols in Fungal
            
            
              Computational
            
            
              Molecular Biology