基本HTML版本
Computational Molecular Biology 2014, Vol. 4, No. 10, 1-17
http://cmb.biopublisher.ca
16
Supplementary Table 3 Percentage of conservation for all localization types based on all peaks
OR=0.1
pC cutoff
K4/cutoff
me1me2
me1me2me3
me1me3
me2me3
Average
Single
0.2
50
0.26
0.36
0.37
0.37
0.34
0.3
0.4
100
0.22
0.31
0.33
0.33
0.2975
0.26
0.6
150
0.2
0.29
0.3
0.3
0.2725
0.24
0.8
200
0.18
0.26
0.28
0.28
0.25
0.22
1.0
250
0.14
0.22
0.23
0.22
0.2025
0.18
OR=0.3
pC cutoff
K4/cutoff
me1me2
me1me2me3
me1me3
me2me3
Average
Single
0.2
50
0.27
0.36
0.36
0.37
0.34
0.3
0.4
100
0.23
0.31
0.32
0.33
0.2975
0.26
0.6
150
0.2
0.28
0.3
0.3
0.27
0.24
0.8
200
0.18
0.26
0.27
0.28
0.2475
0.22
1.0
250
0.15
0.22
0.23
0.22
0.205
0.18
OR=0.5
pC cutoff
K4/cutoff
me1me2
me1me2me3
me1me3
me2me3
Average
Single
0.2
50
0.26
0.36
0.36
0.37
0.3375
0.3
0.4
100
0.22
0.31
0.31
0.33
0.2925
0.26
0.6
150
0.2
0.28
0.29
0.3
0.2675
0.24
0.8
200
0.18
0.26
0.26
0.28
0.245
0.22
1.0
250
0.15
0.22
0.22
0.22
0.2025
0.18
OR=0.7
pC cutoff
K4/cutoff
me1me2
me1me2me3
me1me3
me2me3
Average
Single
0.2
50
0.26
0.36
0.35
0.37
0.335
0.3
0.4
100
0.22
0.31
0.31
0.33
0.2925
0.26
0.6
150
0.2
0.28
0.29
0.31
0.27
0.24
0.8
200
0.18
0.26
0.26
0.28
0.245
0.22
1.0
250
0.14
0.22
0.22
0.22
0.2
0.18
OR=1.0
pC cutoff
K4/cutoff
me1me2
me1me2me3
me1me3
me2me3
Average
Single
0.2
50
0.28
0.45
0.35
0.39
0.3675
0.3
0.4
100
0.23
0.39
0.31
0.35
0.32
0.26
0.6
150
0.21
0.36
0.29
0.32
0.295
0.24
0.8
200
0.19
0.33
0.26
0.3
0.27
0.22
1.0
250
0.15
0.28
0.22
0.24
0.2225
0.18
Supplementary Table 4 Genes associating with
Nucleosome
term in me2me3 colocalization type
RefSeq
Gene symbol
Summary
NM_004893
H2AFY
H2A histone family, member Y
NM_021062
HIST1H2BB
histone cluster 1, H2bb
NM_005633
SOS1
son of sevenless homolog 1 (Drosophila)
NM_001809
C2orf18 CENPA
centromere protein A
NM_033445
HIST3H2A
histone cluster 3, H2a
NM_005320
HIST1H1D
histone cluster 1, H1d
NM_003510
HIST1H2AK
histone cluster 1, H2ak
NM_003540
HIST1H4D HIST1H4F
histone cluster 1, H4f
NM_003518
HIST1H2BG
histone cluster 1, H2bg
NM_003527
HIST1H2BH HIST1H2BO OR2B6
histone cluster 1, H2bo
NM_012412
H2AFV
H2A histone family, member V
NM_003519
HIST1H2BL
histone cluster 1, H2bl
NM_005322
HIST1H1B
histone cluster 1, H1b