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Computational Molecular Biology 2014, Vol. 4, No. 10, 1-17
http://cmb.biopublisher.ca
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Supplementary Table 1 Percentage and peak number for all localization type in TSS-proximal regions, non-TSS-proximal regions
and all peaks
Gene-related peaks
me1
me1me2 me1me2me3 me1me3 me2
me2me3 me3
Distribution of TPRs Number
5,948
1,278
536
726
3,899 1,860
13,212
Percentage(Number/27459) 0.22
0.05
0.02
0.03
0.14
0.07
0.48
Distribution of non-
TPRs
Number
33,086 1,494
991
1,907
3,124 2,960
11,262
Percentage(Number/54824) 0.60
0.03
0.02
0.03
0.06
0.05
0.21
Distribution of all
peaks
Number
39,034 2,772
1,527
2,633
7,023 4,820
24,474
Percentage(Number/82283) 0.47
0.03
0.02
0.03
0.09
0.06
0.30
Supplementary Table 2 Percentage of conservation for all localization types based on all TPRs
OR = 0.1
pC cutoff
me1me2
me1me2me3
me1me3
me2me3
Average
Single
0.2
0.3
0.49
0.49
0.45
0.4325
0.44
0.4
0.26
0.43
0.45
0.4
0.385
0.39
0.6
0.24
0.41
0.42
0.37
0.36
0.37
0.8
0.21
0.39
0.4
0.35
0.3375
0.34
1.0
0.17
0.33
0.34
0.28
0.28
0.29
OR = 0.3
pC cutoff
me1me2
me1me2me3
me1me3
me2me3
Average
Single
0.2
0.3
0.48
0.49
0.45
0.43
0.44
0.4
0.26
0.42
0.45
0.4
0.3825
0.39
0.6
0.24
0.4
0.42
0.37
0.3575
0.37
0.8
0.21
0.38
0.39
0.35
0.3325
0.34
1.0
0.17
0.33
0.34
0.28
0.28
0.29
OR = 0.5
pC cutoff
me1me2
me1me2me3
me1me3
me2me3
Average
Single
0.2
0.3
0.48
0.48
0.45
0.4275
0.44
0.4
0.26
0.43
0.44
0.4
0.3825
0.39
0.6
0.24
0.4
0.41
0.37
0.355
0.37
0.8
0.22
0.38
0.39
0.35
0.335
0.34
1.0
0.17
0.33
0.33
0.28
0.2775
0.29
OR = 0.7
pC cutoff
me1me2
me1me2me3
me1me3
me2me3
Average
Single
0.2
0.3
0.48
0.47
0.46
0.4275
0.44
0.4
0.26
0.42
0.43
0.41
0.38
0.39
0.6
0.24
0.4
0.41
0.38
0.3575
0.37
0.8
0.21
0.38
0.39
0.35
0.3325
0.34
1.0
0.17
0.32
0.33
0.29
0.2775
0.29
OR = 1.0
pC cutoff
me1me2
me1me2me3
me1me3
me2me3
Average
Single
0.2
0.32
0.57
0.45
0.48
0.455
0.44
0.4
0.27
0.51
0.42
0.44
0.41
0.39
0.6
0.25
0.49
0.4
0.41
0.3875
0.36
0.8
0.23
0.46
0.38
0.38
0.3625
0.33
1.0
0.18
0.41
0.32
0.32
0.3075
0.28