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Table of Contents
Table of Contents
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Cover 1 -
Copyright 2 -
Content 3 -
Title 4 -
Abstract 4 -
Keywords 4 -
Background 4 -
1 Results and Discussion 5 -
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1.1 Matching of mapped wESTs with brachypodium genome sequences itice 5 -
1.2 Syntenic relationship of individual wheat conse- nsus chromosomes with brachypodium chromosomes 6 -
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1.2.1 Wheat consensus chromosome 1 (WC1) 6 -
1.2.2 Wheat consensus chromosome 2 (WC2) 7 -
1.2.3 Wheat consensus chromosome 3 (WC3) Gen 7 -
1.2.4 Wheat consensus chromosome 4 (WC4) 7 -
1.2.5 Wheat consensus chromosome 5 (WC5) 7 -
1.2.6 Wheat consensus chromosome 6 (WC6) 7 -
1.2.7 Wheat consensus chromosome 7 (WC7) 8
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1.3 Consensus chromosome bins containing high density of ESTs showing homology with brachy- podium 8 -
1.4 Colinear syntenic regions/blocks between wheat and brachypodium genomes 8 -
1.5 Divergence between wheat-brachypodium ho- mologs e Gen 9 -
1.6 Comparison of wheat and brachypodium geno- mes in relation to the intermediate ancestral genome 9 -
1.7 Wheat ESTs uniquely mapped to specific bins in wheat and their use for inferring relation with brachypodium genome 11 -
1.8 Comparison of wheat-brachypodium synteny with previously reported wheat-rice synteny eae Ge 11
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2 Conclusions 11 -
3 Materials and Methods 12 -
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3.1 Sequences used for synteny analysis 12 -
3.2 Criteria used for sequence comparisons nom 12 -
3.3 Construction of consensus map of wheat genome 12 -
3.4 Identification of centromere location 13 -
3.5 Estimation of EST density 13 -
3.6 Estimation of nonsynonymous vs. synonymous substitution rates (Ka/Ks) Geno 13
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Authors' Contributions 13 -
Acknowledgements 13 -
References onal P 13 -
Figure 1 6 -
Figure 2 9 -
Figure 3 10 -
Figure 4 12 -
Table 1 16 -
Table 2 11 -
Supplementary Table 1 18-19 -
Supplementary Table 2 49 -
Supplementary Table 3 50 -
Supplementary Table 4 58 -
Supplementary Table 5 60 -
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