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Supplementary Table 1e Details of the homoeologous group 5 consensus chromosome. The consensus chromosome on the right is
composed of only ESTs those were mapped exclusively to individual chromosome of homoeologous group 5, and showing homology
with brachypodium chromosomes (Bd). Within consensus chromosome, different colours reflect different consensus bins, end point
of consensus bins are designated by their proprtional fraction length (FL) from centromere
wEST Id
5A
5B
5D
Bd Start on Bd End on Bd Consensus FL
BE399966 5AS10-0.98-1.00 5BS6-0.81-1.00
5DS2-0.78-1.00
3
21748103
21748417
1.00
NSF18820 5AS3-0.75-0.98
5BS6-0.81-1.00
5DS2-0.78-1.00
4
755999
760281
0.98
BE591734 5AS3-0.75-0.98
5BS6-0.81-1.00
5DS5-0.67-0.78
4
924284
924851
BF474606
5AS3-0.75-0.98
5BS6-0.81-1.00
5DS2-0.78-1.00
4
4840047
4840339
BE496903 5AS3-0.75-0.98
5BS5-0.71-1.00*
5DS1-0.63-0.67
4
7002931
7003738
NSF18402 5AS3-0.75-0.98
5BS6-0.81-1.00
5DS2-0.78-1.00
2
11422920
11429145
NSF18467 5AS3-0.75-0.98
5BS6-0.81-1.00
…
3
21745739
21749780
BF482671
5AS3-0.75-0.98
5BS8-0.56-1.00*
5D
4
22317224
22318969
BF201852
…
5BS6-0.81-1.00
5DS2-0.78-1.00
4
25013798
25018695
BE499835 5AS3-0.75-0.98
5BS6-0.81-1.00
5DS2-0.78-1.00
3
46884362
46885269
BE444854 5AS3-0.75-0.98
5BS6-0.81-1.00
5DS2-0.78-1.00
1
53727767
53728389
BE515435 …
5BS6-0.81-1.00
5DS2-0.78-1.00
1
58570407
58570978
BE500856 5AS3-0.75-0.98
5BS5-0.71-0.81
…
1
73335707
73335989
0.81
BE403373 5AS3-0.75-0.98
5BS5-0.71-0.81
5DS1-0.63-0.67
2
18393598
18394181
BE403471 5AS3-0.75-0.98
5BS5-0.71-0.81
5DS1-0.63-0.67
2
28200091
28200652
BE495282 5AS3-0.75-0.98
5BS5-0.71-0.81
…
4
912585
913364
BF484701
5AS3-0.75-0.98
5BS5-0.71-0.81
C-5DS5-0.67*
4
1373032
1373317
BF202632
5AS3-0.75-0.98
5BS5-0.71-0.81
C-5DS1-0.63
4
2925033
2925982
BE606865 …
5BS5-0.71-0.81
5DS5-0.67-0.78
1
61900757
61901079
0.78
BG314248 …
5BS5-0.71-0.81
5DS5-0.67-0.78
4
964625
965123
BE499166 5AS3-0.75-0.98
5BS8-0.56-0.71
5DS1-0.63-0.67
2
39997624
39998433
0.71
BG606337 5AS3-0.75-0.98
5BS8-0.56-0.71
5DS1-0.63-0.67
4
1914112
1914687
BF484212
5AS3-0.75-0.98
5BS8-0.56-0.71
5DS1-0.63-0.67
4
1610261
1611088
NSF15653 5AS3-0.75-0.98
5BS8-0.56-0.71
5DS1-0.63-0.67
4
1474087
1480358
BE439194 5AS1-0.40-0.98* 5BS
C-5DS1-0.63
4
2023698
2024285
0.63
BQ294783 5AS3-0.75-0.98
5BS8-0.56-0.71
C-5DS1-0.63
4
2481976
2482951
BE404894 5AS3-0.75-0.98
5BS8-0.56-0.71
C-5DS1-0.63
4
2480975
2481819
BF291319
5AS3-0.75-0.98
5BS8-0.56-0.71
C-5DS1-0.63
4
2744283
2745083
BF485230
5AS3-0.75-0.98
5BS8-0.56-0.71
C-5DS1-0.63
4
40167052
40168641
BE352603 C-5AS1-0.40
5BS8-0.56-0.71
C-5DS1-0.63
4
2033563
2036615
BG275072 …
5BS8-0.56-0.71
C-5DS1-0.63
4
2474006
2474677
BF292263
…
5BS8-0.56-0.71
C-5DS1-0.63
5
17837707
17838311
BE498665 5AS
5BS4-0.43-0.56
C-5DS1-0.63
4
3054572
3055204
0.56
BE591215 5AS1-0.40-0.75
5BS4-0.43-0.56
5DL9-0.74-0.76
1
51686475
51687893
BE591974 5AS1-0.40-0.75
5BS4-0.43-0.56
C-5DS1-0.63
1
4380408
4380904
BE498878 5AS1-0.40-0.75
5BS4-0.43-0.56
C-5DS1-0.63
3
57415943
57416089
BE443334 5AS1-0.40-0.75
5BS4-0.43-0.56
C-5DS1-0.63
4
4856906
4859610
BE500291 5AS1-0.40-0.75
5BS4-0.43-0.56
C-5DS1-0.63
4
5297814
5299131
BG313707 5AS1-0.40-0.75
5BS4-0.43-0.56
C-5DS1-0.63
4
5249265
5250824
BE445181 5AS1-0.40-0.75
5BS4-0.43-0.56
…
4
4629286
4629724
BE444644 5AS1-0.40-0.75
5BS4-0.43-0.56
C-5DS1-0.63
4
5409017
5410108
BE404490 5AS1-0.40-0.75
5BS4-0.43-0.56
C-5DS1-0.63
4
44162080
44163263
BE604904 5AS1-0.40-0.75
5BS4-0.43-0.56
…
4
4237216
4237420
BE498768 5AS1-0.40-0.75
5BS4-0.43-0.56
C-5DS1-0.63
4
3891770
3892781
BF291693
5AS1-0.40-0.75
5BS4-0.43-0.56
C-5DS1-0.63
4
3596369
3596704
BE443538 5AS1-0.40-0.75
5BS4-0.43-0.56
C-5DS1-0.63
4
5462508
5463792
NSF17565 5AS1-0.40-0.75
5BS4-0.43-0.56
C-5DS1-0.63
4
5292823
5299194
BE591461 5AS1-0.40-0.98* 5BS4-0.43-0.56
C-5DS1-0.63
3
4233368
4233918
BE403618 C-5AL12-0.35
5BS4-0.43-0.56
C-5DS1-0.63
4
44243374
44245395
BE443426 C-5AS1-0.40
5BS4-0.43-0.56
C-5DS1-0.63
4
44045172
44045819
BE604729 C-5AS1-0.40
5BS4-0.43-0.56
C-5DS1-0.63
4
43827277
43827751