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Supplementary Table 1a Details of the homoeologous group 1 consensus chromosome. The consensus chromosome on the right is
composed of only ESTs those were mapped exclusively to individual chromosome of homoeologous group 1, and showing homology
with brachypodium chromosomes (Bd). Within consensus chromosome, different colours reflect different consensus bins, end point
of consensus bins are designated by their proprtional fraction length (FL) from centromere
wEST Id
1A
1B
1D
Bd Start on Bd End on Bd Consensus FL
BF473195 …
1BS9-0.84-1.06
1DS5-0.70-1.00
1
732900
733481
1.06
BE404740 …
1BS.sat18-0.50-1.00 1DS5-0.70-1.00
1
1023564
1025282
BE444890 1AS3-0.86-1.00
1BS.sat18-0.50-1.00 1DS5-0.70-1.00
1
3965099
3965588
BF482663 1AS3-0.86-1.00
1BS.sat18-0.50-1.00 1DS5-0.70-1.00
3
5163248
5163547
BF201480 1A
1BS.sat18-0.50-1.00 1DS5-0.70-1.00
4
11569093
11570667
BE406438 1AS3-0.86-1.00
1BS.sat18-0.50-1.00 1DS5-0.70-1.00
1
11770551
11773404
BE405648 1AS1-0.47-0.86
1BS.sat18-0.50-1.00 C-1DS3-0.48
1
12204377
12204910
BE606221 1AS3-0.86-1.00
1BS.sat18-0.50-1.00 …
1
18628898
18631100
BE637971 1AS3-0.86-1.00
1BS.sat18-0.50-1.00 1DS5-0.70-1.00
3
19644866
19645273
NSF15345 1AS3-0.86-1.00
1BS.sat18-0.50-1.00 1DS5-0.70-1.00
3
30975426
30977124
NSF15303 1AS3-0.86-1.00
1BS.sat18-0.50-1.00 1DS5-0.70-1.00
2
36297534
36302083
BE403717 1AS3-0.86-1.00
1BS
1DS5-0.70-1.00
2
36298500
36298765
BG264080 1AS3-0.86-1.00
1BS9-0.84-1.06
1DS1-0.59-0.70
2
36970997
36971347
BF473056 1AS3-0.86-1.00
1BS.sat19-0.31-1.00* …
2
37633026
37633668
BF482898 1AS1-0.47-1.00* 1BS.sat18-0.50-1.00 1DS5-0.70-1.00
2
37717504
37718142
BE443103 1AS3-0.86-1.00
1BS.sat18-0.50-1.00 1DS5-0.70-1.00
2
37735701
37736023
BE495292 1AS3-0.86-1.00
1BS.sat18-0.50-1.00 1DS5-0.70-1.00
2
37840623
37841788
BE424845 1AS3-0.86-1.00
1BS.sat18-0.50-1.00 1DS5-0.70-1.00
2
37844256
37844954
BE586140 1AS3-0.86-1.00
1BS.sat18-0.50-1.00 1DS5-0.70-1.00
2
37994556
37995553
BG605525 1AS3-0.86-1.00
1BS.sat18-0.50-1.00 1DS5-0.70-1.00
2
40015408
40015945
BE443401 1AS3-0.86-1.00
1BS.sat18-0.50-1.00 …
2
40146129
40147733
BF428925 1AS3-0.86-1.00
1BS.sat18-0.50-1.00 …
2
45437540
45438016
BF473448 1AS3-0.86-1.00
1BS.sat19-0.31-0.50 …
2
49255173
49255755
BG605065 1AS3-0.86-1.00
…
1DS5-0.70-1.00
3
56763255
56765608
BE499711 1AS3-0.86-1.00
…
1DS5-0.70-1.00
1
61160720
61162626
BE606302 1AS1-0.47-0.86
…
1DS5-0.70-1.00
2
38297367
38297728
0.86
NSF18059 1AS1-0.47-0.86
1BS10-0.50-0.84
1DS1-0.59-0.70
3
36884593
36887749
0.70
BE500433 1AS1-0.47-0.86
…
1DS1-0.59-0.70
2
37782675
37782815
BG262247 1AS1-0.47-0.86
1BS10-0.50-0.84
1DS3-0.48-0.59
2
32517694
32518608
0.59
BF483661 1AS1-0.47-0.86
1BS10-0.50-0.84
…
2
35797089
35798010
NSF17935 1AS1-0.47-0.86
1BS10-0.50-0.84
…
2
26003187
26005365
BE426257 1AS1-0.47-0.86
1BS10-0.50-0.84
C-1DS3-0.48
2
36079560
36080209
BE425354 1AS1-0.47-0.86
…
C-1DS3-0.48
3
21942883
21943497
0.50
BE637864 1AS1-0.47-0.86
C-1BS10-0.50
C-1DS3-0.48
2
32493283
32493969
0.48
BE406516 1AS1-0.47-0.86
C-1BS10-0.50
…
2
33085875
33087565
BE591601 1AS1-0.47-0.86
C-1BS10-0.50
C-1DS3-0.48
2
33444208
33445215
BE425898 1AS1-0.47-0.86
C-1BS10-0.50
C-1DS3-0.48
2
34832827
34833317
BE406901 1AS1-0.47-0.86
C-1BS10-0.50
C-1DS3-0.48
2
34869239
34869659
BE497372 1AS1-0.47-0.86
C-1BS10-0.50
C-1DS3-0.48
2
35262539
35262773
BE444846 1AS1-0.47-0.86
…
C-1DS3-0.48
2
35938025
35938482
BE403749 1AS1-0.47-0.86
…
C-1DS3-0.48
2
35944543
35945824
BE604047 …
C-1BS10-0.50
C-1DS3-0.48
3
22451517
22452217
0.47
BE499250† …
C-1BS10-0.50
C-1DS3-0.48
2
30163457
30164687
BE637715 …
C-1BS10-0.50
C-1DS3-0.48
2
31953144
31953905
BE606308 …
C-1BS10-0.50
C-1DS3-0.48
2
34824952
34829639
NSF17612 C-1AS1-0.47
C-1BS10-0.50
C-1DS3-0.48
1
41875240
41876311
Centronere
0
BE497107 C-1AL1-0.17
C-1BL6-0.32
C-1DL4-0.18
3
22829886
22833089
BF474863 C-1AL1-0.17
C-1BL6-0.32
C-1DL4-0.18
1
26856931
26858958
BE444094 C-1AL1-0.17
C-1BL6-0.32
1DL4-0.18-0.41
3
29080604
29081767
BE446010 C-1AL1-0.17
C-1BL6-0.32
1DL4-0.18-0.41
3
29831997
29833684