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Triticeae Genomics and Genetics 2012, Vol.3, No.3, 25
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Gill K.S., Choi D.W., Fenton R.D., Close T.J., McGuire P.E., Qualset
C.O., and Anderson J.A., 2004, A 2600-locus chromosome bin map of
wheat homoeologous group 2 reveals interstitial gene-rich islands and
colinearity with rice, Genetics, 168: 625-637 http://dx.doi.org/
10.1534/genetics.104.034801 PMid:15514040 PMCid:1448822
Devos K.M., 2010, Grass genome organization and evolution, Curr. Opin.
Plant Biol., 13: 139-145 http://dx.doi.org/10.1016/j.pbi.2009.12.005
PMid:20064738
Distelfeld A., Uauy C., Olmos S., Schlatter A.R., Dubcovsky J., and Fahima
T., 2004, Microcolinearity between a 2
-
cM region encompassing the
grain protein content locus
Gpc
-
B1
on wheat chromosome 6B and a
350-kb region on rice chromosome 2, Funct. Integr. Genomics, 4:
59-66 http://dx.doi.org/10.1007/s10142-003-0097-3
Draper J., Mur L.A.J., Jenkins G. Ghosh-Biswas G.C., Bablak P., Hasterok
R., and Routledge A.P.M., 2001,
Brachypodium distachyon
, a new
model system for functional genomics in grasses, Plant Physiol., 127:
1539-1555
http://dx.doi.org/10.1104/pp.010196
PMid:11743099
PMCid:133562
Freeling M., 2001, Grasses as a single genetic system, reassessment 2001,
Plant Physiol., 125: 1191-1197 http://dx.doi.org/10.1104/pp.125.3.1191
PMid:11244100 PMCid:1539374
Gill B.S., Friebe B., and Endo T.R., 1991, Standard karyotype and
nomenclature system for description of chromosome bands and
structural aberrations in wheat (
Triticum aestivum
), Genome, 34:
830-839 http://dx.doi.org/10.1139/g91-128
Gill K.S., Gill B.S., Endo T.R., and Boyko E.V., 1996a, Identification and
high-density mapping of gene-rich regions in chromosome group 5 of
wheat, Genetics, 143: 1001-1012 PMid:8725245 PMCid:1207318
Gill K.S., Gill B.S., Endo T.R., and Taylor T., 1996b, Identification and
high-density mapping of gene-rich regions in chromosome group 1 of
wheat. Genetics, 144: 1883-1891 PMid:8978071 PMCid:1207735
Gu Y.Q., Ma Y., Huo N., Vogel J.P., You F.M., Lazo G.R., Nelson W.M.,
Soderlund C., Dvorak J., Anderson O.D., and Luo M.C., 2009, A
BAC-based physical map of
Brachypodium distachyon
and its
comparative analysis with rice and wheat, BMC Genomics, 10: 496
http://dx.doi.org/10.1186/1471-2164-10-496 PMid:19860896 PMCid:
2774330
Hackauf B., Rudd S., Voort J.R.V, Miedaner T., and Wehling P., 2009,
Comparative mapping of DNA sequences in rye (
Secale cereale
L.) in
relation to the rice genome, Theor. Appl. Genet., 118: 371-384
http://dx.doi.org/10.1007/s00122-008-0906-0 PMid:18953524
Hossain K.G., Kalavacharla V., Lazo G.R., Hegstad J., Wentz M.J., Kianian
P.M.A., Simons K., Gehlhar S., Rust K.L., Syamala R.R., Obeori K.,
Bhamidimarri S., Karunadharma P., Chao S., Anderson D., Qi L.L.,
Echalier B., Gill B.S., Linkiewicz A.M., Ratnasiri A., Dubcovsky J.,
Akhunov E.D., Dvorak J., Miftahudin, Ross K., Gustafson J.P.,
Radhawa H.S., Dilbirligi M., Gill K.S., Peng J.H., Lapitan N.L.V.,
Greene R.A., Bermudez-Kandianis C.E., Sorrells M.E., Feril O.,
Pathan M.S., Nguyen H.T., Gonzalez-Hernandez J.L., Conley E.J.,
Anderson J.A., Choi D.W., Fenton, Close T.J., McGuire P.E., Qualset
C.O., and Kianian S.F., 2004, A chromosome bin map of 2148
expressed sequence tag loci of wheat homoeologous group 7, Genetics,
168: 687-699 http://dx.doi.org/10.1534/genetics.104.034850 PMid:
15514045 PMCid:1448827
Huo N., Gu Y.Q., Lazo G.R., Vogel J.P., Coleman-Derr D., Luo M.C.,
Thilmony R., Garvin D.F., and Anderson O.D., 2006, Construction and
characterization of two BAC libraries from
Brachypodium distachyon
,
a new model for grass genomics, Genome, 49: 1099-1108 http://
dx.doi.org/10.1139/g06-087 PMid:17110990
Huo N., Lazo G.R., Vogel J.P., You F.M., Ma Y., Hayden D.M.,
Coleman-Derr D., Hill T.A., Dvorak J., Anderson O.D., Luo M.C., and
Gu Y.Q., 2008, The nuclear genome of
Brachypodium distachyon
:
analysis of BAC end sequences, Funct. Integr. Genomics, 8: 135-147
http://dx.doi.org/10.1007/s10142-007-0062-7
Huo N., Vogel J.P., Lazo G.R., You F.M., Ma Y., McMohan S., Dvorak J.,
Anderson O.D., Luo M.C., and Gu Y.Q., 2009, Structural
characterization of
Brachypodium
genome and its syntenic relationship
with rice and wheat, Plant Mol. Biol., 70: 47-61 http://dx.doi.
org/10.1007/s11103-009-9456-3 PMid:19184460
International
Brachypodium
Initiative, 2010, Genome sequencing and
analysis of the model grass
Brachypodium distachyon
, Nature, 463:
763-768 http://dx.doi.org/10.1038/nature08747 PMid:20148030
International Rice Genome Sequencing Project, 2005, The map-based
sequence of the rice genome, Nature, 436: 793-800 http://dx.doi.org/
10.1038/nature03895 PMid:16100779
Kellogg E.A., 2001, Evolutionary history of the grasses, Plant Physiol. 125:
1198-1205 http://dx.doi.org/10.1104/pp.125.3.1198 PMid:11244101
PMCid:1539375
Kumar S., Mohan A., Balyan H.S., and Gupta P.K., 2009, Orthology
between genomes of
Brachypodium
, wheat and rice, BMC Res. Notes,
2: 93 http://dx.doi.org/10.1186/1756-0500-2-93 PMid:19470185 PMCid:
2695472
Linkiewicz A.M., Qi L.L., Gill B.S., Ratnasiri A., Echalier B., Chao S.,
Lazo G.R., Hummel D.D., Anderson O.D., Akhunov E.D., Dvorak J.,
Pathan M.S., Nguyen H.T., Peng J.H., Lapitan N.L.V., Miftahudin,
Gustafson J.P., La Rota C.M., Sorrells M.E., Hossain K.G.,
Kalavacharla V., Kianian S.F., Sandhu D., Bondaeva S.N., Gill K.S.,
Conley E.J., Anderson J.A., Fenton R.D., Close T.J., McGuire P.E.,
Qualset C.O., and Dubcovsky J., 2004, A 2500-locus bin map of wheat
homoeologous group 5 provides insights on gene distribution and
colinearity with rice, Genetics, 168: 665–676 http://dx.doi.org/10.
1534/genetics.104.034835 PMid:15514043 PMCid:1448825
Luo M.C., Deal K.R., Akhunov E.D., Akhunova A.R., Anderson O.D.,
Anderson J.A., Blake N., Clegg M.T., Coleman-Derr D., Conley E.J.,
Crossman C.C., Dubcovsky J., Gill B.S., Gu Y.Q., Hadam J., Heo H.Y.,
Huo N., Lazo G., Ma Y., Mathews D.E., McGuire P.E., Morrel P.L.,
Qualset C.O., Renfro J., Tabanao D., Talbert L.E., Tian C., Toleno
D.M., Warburton M.L., You F.M., Zhang W., and Dvorak J., 2009,
Genome comparisons reveal a dominant mechanism of chromosome
number reduction in grasses and accelerated genome evolution in
Triticeae, Proc. Natl. Acad. Sci. USA., 106: 15780-15785 http://dx.doi.
org/10.1073/pnas.0908195106 PMid:19717446 PMCid:2747195
Mayers K.F.X., Martis M., Hedley P.E., Simkova H., Liu H., Mirris J.A.,
Steuernagel B., Taudien S., Roessner S., Gundlach H., Kubalakova M.,
Schankova P., Murat F., Felder M., Nussbaumer T., Graner A., Salse J.,
Endo T., Sakai H., Tanaka T., Itoh T., Sato K., Platzer M., Matsumoto
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