11 - cmb-2012, Vol. 1, No. 2页

计算分子生物学(网络版), 2012 年, 第 1 卷, 第 2 篇, 第 7-1 5 页
Jisuan Fenzi Shengwuxue (Online), 2012, Vol.1, No.2, 7-15
http://cmb.5th.sophiapublisher.com
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附录
附录 1 各物种全基因组的相关信息
Supplement 1 List of genomes used in this study
物种
Organism
登录号
Accession
分类 ID
TaxaID
进化谱系
NCBI Lineage
Staphylococcus aureus subsp. aureus JH1 NC_009632 359787 F.1.1.1.1.1
Staphylococcus aureus subsp. aureus JH9 NC_009487 359786 F.1.1.1.1.1
Staphylococcus aureus subsp. aureus Mu3 NC_009782 418127 F.1.1.1.1.1
Staphylococcus aureus subsp. aureus Mu50 NC_002758 158878 F.1.1.1.1.1
Staphylococcus aureus subsp. aureus USA300_FPR3757 NC_007793 451515 F.1.1.1.1.1
Staphylococcus aureus subsp. aureus USA300_TCH1516 NC_010079 451516 F.1.1.1.1.1
Staphylococcus epidermidis ATCC 12228 NC_004461 176280 F.1.1.1.1.2
Staphylococcus epidermidis RP62A NC_002976 176279 F.1.1.1.1.2
Lactobacillus brevis ATCC 367 NC_008497 387344 F.1.2.1.1.1
Lactobacillus helveticus DPC 4571 NC_010080 405566 F.1.2.1.1.2
Lactobacillus johnsonii NCC 533 NC_005362 257314 F.1.2.1.1.3
Lactobacillus plantarum WCFS1 NC_004567 220668 F.1.2.1.1.4
Lactobacillus salivarius UCC118 NC_007929 362948 F.1.2.1.1.5
Pediococcus pentosaceus ATCC 25745 NC_008525 278197 F.1.2.1.2.1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 NC_008531 203120 F.1.2.2.1.1
Oenococcus oeni PSU-1 NC_008528 203123 F.1.2.2.2.1
Lactococcus lactis subsp. cremoris MG1363 NC_009004 416870 F.1.2.3.1.1
Lactococcus lactis subsp. cremoris SK11 NC_008527 272622 F.1.2.3.1.1
Lactococcus lactis subsp. lactis Il1403 NC_002662 272623 F.1.2.3.1.1
Streptococcus agalactiae 2603V/R NC_004116 208435 F.1.2.3.2.1
Streptococcus agalactiae A909 NC_007432 205921 F.1.2.3.2.1
Streptococcus agalactiae NEM316 NC_004368 211110 F.1.2.3.2.1
Streptococcus gordonii str. Challis substr. CH1 NC_009785 467705 F.1.2.3.2.2
Streptococcus pneumoniae D39 NC_008533 373153 F.1.2.3.2.3
Streptococcus pneumoniae R6 NC_003098 171101 F.1.2.3.2.3
Streptococcus pneumoniae TIGR4 NC_003028 170187 F.1.2.3.2.3
Streptococcus pyogenes M1 GAS NC_002737 160490 F.1.2.3.2.4
Streptococcus pyogenes MGAS2096 NC_008023 370553 F.1.2.3.2.4
Streptococcus pyogenes MGAS315 NC_004070 198466 F.1.2.3.2.4
Streptococcus pyogenes MGAS5005 NC_007297 293653 F.1.2.3.2.4
Streptococcus pyogenes MGAS9429 NC_008021 370551 F.1.2.3.2.4
Streptococcus pyogenes SSI-1 NC_004606 193567 F.1.2.3.2.4
Streptococcus suis 05ZYH33 NC_009442 391295 F.1.2.3.2.5
Streptococcus suis 98HAH33 NC_009443 391296 F.1.2.3.2.5
Streptococcus thermophilus CNRZ1066 NC_006449 299768 F.1.2.3.2.6
Streptococcus thermophilus LMD-9 NC_008532 322159 F.1.2.3.2.6
Streptococcus thermophilus LMG 18311 NC_006448 264199 F.1.2.3.2.6
Alkaliphilus metalliredigens QYMF NC_009633 293826 F.2.1.1.1.1
Alkaliphilus oremlandii OhILAs NC_009922 350688 F.2.1.1.1.2
Clostridium acetobutylicum ATCC 824 NC_003030 272562 F.2.1.1.2.1
Clostridium beijerinckii NCIMB 8052 NC_009617 290402 F.2.1.1.2.2
Clostridium botulinum A str. ATCC 19397 NC_009697 441770 F.2.1.1.2.3
Clostridium botulinum A str. ATCC 3502 NC_009495 413999 F.2.1.1.2.3
Clostridium botulinum A str. Hall NC_009698 441771 F.2.1.1.2.3
Clostridium botulinum F str. Langeland NC_009699 441772 F.2.1.1.2.3
Clostridium difficile 630 NC_009089 272563 F.2.1.1.2.4
Clostridium kluyveri DSM 555 NC_009706 431943 F.2.1.1.2.5
Clostridium novyi NT NC_008593 386415 F.2.1.1.2.6
Clostridium perfringens ATCC 13124 NC_008261 195103 F.2.1.1.2.7
Clostridium perfringens SM101 NC_008262 289380 F.2.1.1.2.7