Page 7 - Molecular Plant Breeding

Molecular Plant Breeding 2012, Vol.3, No.2, 11 -25
http://mpb.sophiapublisher.com
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Table 1 SSR polymorphism estimated over all SSR markers among the two species of Corchorus
Species Total number of polymorphic loci (%) Total number of alleles Total No. of rare alleles PIC
C. capsularis 112 (65.12%) 329 (286a) 84 (59b ) 0.198
C. olitorius 140 (80.92%) 417 (385a) 98 (73b ) 0.203
Note: a (superscript) Number of alleles identified by polymorphic SSR loci; b (superscript) Total number of rare alleles unique to
only one species
Table 2 Detailed genetic information of polymorphic SSRs in the two cultivated jute species
No. of alleles/locus (SSR
loci) †
Names of polymorphic SSR loci PIC range
(Mean)
(A) C. capsularis 2 (65) HK- 69, HK-73 , MJM1055, MJM220, MJM515, HK -60, HK -71, HK- 75, HK- 85,
MJM1114, MJM1147, MJM1148, MJM443, MJM591, MJM661, MJM795, J121, J170,
MJM1011, MJM1017, MJM1057, MJM1081, MJM1099, MJM1129, MJM1141,
MJM117, MJM134, MJM641, MJM665, MJM141, MJM143, MJM144, MJM206- a,
MJM209, MJM215, MJM227, MJM232 -b, MJM238, MJM240, MJM247, MJM340,
MJM378, MJM399, MJM407, MJM419, MJM47, MJM552, MJM595, MJM606,
MJM608, MJM621, MJM626, MJM696, MJM700, MJM759, MJM1047, MJM1084,
MJM129, MJM173, MJM198, MJM212, MJM429, MJM509, MJM522, MJM540
0.013- 0.374
(0.189)
3 (36) MJM590, MJM435, HK- 87, MJM315, MJM319, MJM639, J139b, MJM1054,
MJM113, MJM642, MJM659, MJM194, MJM206-b, MJM207, MJM214, MJM22,
MJM229, MJM232- a, MJM234, MJM284, MJM296, MJM329, MJM34, MJM372,
MJM373, MJM377, MJM39-a, MJM39- b, MJM574, MJM581, MJM585, MJM610,
MJM832, MJM136, MJM196, MJM78- b
0.026- 0.587
(0.314)
4 (7) MJM656, MJM677, MJM231, MJM304, MJM562- a, MJM566, MJM181 0.426- 0.674
(0.567)
5 (4) MJM1071, MJM201, MJM631, MJM221 0.279- 0.731
(0.535)
Total (2-5) 112
(B) C. olitorius 2 (74) HK- 56, MJM1051, MJM1139, MJM295, MJM515, HK- 75, HK- 85, HK- 87,
MJM1114, MJM1147, MJM319, MJM443, MJM591, MJM639, MJM661, MJM795,
J139b, MJM1011, MJM1017, MJM1060, MJM1071, MJM1129, MJM113, MJM1141,
MJM665, MJM143, MJM206- a, MJM206-b, MJM22, MJM227, MJM247, MJM256 ,
MJM296, MJM329, MJM340, MJM39-a, MJM39- b, MJM399, MJM419, MJM446 ,
MJM47, MJM552, MJM566, MJM585, MJM599, MJM608, MJM626, MJM696,
MJM700, MJM78- a, MJM853, HK- 47, HK-53, HK-61, HK-63, HK-68, MJM1053,
MJM1061, MJM1063, MJM1101, MJM1109, MJM145, MJM146, MJM390 ,
MJM391, MJM519, MJM572, MJM592, MJM598, MJM633, MJM675, MJM686 ,
MJM898, MJM999
0.013- 0.374
(0.161)
3 (41) MJM1140, MJM1149, HK- 60, HK-71, MJM1148, MJM315, MJM1054, MJM1057,
MJM1142, MJM117, MJM134, MJM642, MJM677, MJM141, MJM144, MJM201,
MJM209, MJM232 -a, MJM304, MJM372, MJM407, MJM562- a, MJM581, MJM595,
MJM606, MJM610, MJM631, HK- 50, HK- 52, HK-64, MJM1095, MJM1130,
MJM257, MJM294, MJM314, MJM385, MJM557, MJM561, MJM562- b, MJM667 ,
MJM944
0.031- 0.522
(0.228)
4 (15) MJM1099, MJM641, MJM656, MJM194, MJM207, MJM215, MJM229, MJM232 -b,
MJM234- a, MJM238, MJM240, MJM34, MJM373, MJM574, MJM609
0.188- 0.605
(0.419)
5 (6) MJM659, MJM214, MJM231, MJM284, MJM377, MJM1042 0.319- 0.617
(0.499)
6 (4) J121, MJM621, MJM759, MJM832 0.384- 0.589
(0.492)
Total (2-6) 140
Note: MJM = Meerut Jute Microsatellite; Polymorphic SSR loci unique to only one species are in bold; “-a”, “-b” designate two
different loci of a SSR primer; † Represents total number of SSR loci