TGMB_2024v14n3

Tree Genetics and Molecular Breeding 2024, Vol.14, No.3, 132-143 http://genbreedpublisher.com/index.php/tgmb 142 Mushtaq M., Dar A., Basu U., Bhat B., Mir R., Vats S., Dar M., Tyagi A., Ali S., Bansal M., Rai G., and Wani S., 2021, Integrating CRISPR-Cas and next generation sequencing in plant virology, Frontiers in Genetics, 12: 735489. https://doi.org/10.3389/fgene.2021.735489 PMid:34759957 PMCid:PMC8572880 Nystedt B., Street N., Wetterbom A., Zuccolo A., Lin Y., Scofield D., Vezzi F., Delhomme N., Giacomello S., Alexeyenko A., Vicedomini R., Sahlin K., Sherwood E., Elfstrand M., Gramzow L., Holmberg K., Hällman J., Keech O., Klasson L., Koriabine M., Kucukoglu M., Käller M., Luthman J., Lysholm F., Niittylä T., Olson Å., Rilakovic N., Ritland C., Rosselló J., Sena J., Svensson T., Talavera-López C., Theißen G., Tuominen H., Vanneste K., Wu Z., Zhang B., Zerbe P., Arvestad L., Bhalerao R., Bohlmann J., Bousquet J., Gil R., Hvidsten T., Jong P., MacKay J., Morgante M., Ritland K., Sundberg B., Thompson S., Peer Y., Andersson B., Nilsson O., Ingvarsson P., Lundeberg J., and Jansson S., 2013, The Norway spruce genome sequence and conifer genome evolution, Nature, 497: 579-584. https://doi.org/10.1038/nature12211 PMid:23698360 Pan J., Wang B., Pei Z., Zhao W., Gao J., Mao J., and Wang X., 2015, Optimization of the genotyping‐by‐sequencing strategy for population genomic analysis in conifers, Molecular Ecology Resources, 15(4): 711-722. https://doi.org/10.1111/1755-0998.12342 PMid:25367371 Parchman T., Geist K., Grahnen J., Benkman C., and Buerkle C., 2010, Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery, BMC Genomics, 11: 180. https://doi.org/10.1186/1471-2164-11-180 PMid:20233449 PMCid:PMC2851599 Prunier J., Verta J., and MacKay J., 2016, Conifer genomics and adaptation: at the crossroads of genetic diversity and genome function, The New Phytologist, 209(1): 44-62. https://doi.org/10.1111/nph.13565 PMid:26206592 Ralph S., Chun H., Kolosova N., Cooper D., Oddy C., Ritland C., Kirkpatrick R., Moore R., Barber S., Holt R., Jones S., Marra M., Douglas C., Ritland K., and Bohlmann J., 2008, A conifer genomics resource of 200 000 spruce (Picea spp.) ESTs and 6 464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis), BMC Genomics, 9: 484. https://doi.org/10.1186/1471-2164-9-484 PMid:18854048 PMCid:PMC2579922 Ralph S., Yueh H., Friedmann M., Aeschliman D., Zeznik J., Nelson C., Butterfield Y., Kirkpatrick R., Liu J., Jones S., Marra M., Douglas C., Ritland K., and Bohlmann J., 2006, Conifer defence against insects: microarray gene expression profiling of Sitka spruce (Picea sitchensis) induced by mechanical wounding or feeding by spruce budworms (Choristoneura occidentalis) or white pine weevils (Pissodes strobi) reveals large-scale changes of the host transcriptome, Plant, Cell & Environment, 29(8): 1545-1570. https://doi.org/10.1111/j.1365-3040.2006.01532.x PMid:16898017 Rellstab C., Dauphin B., Zoller S., Brodbeck S., and Gugerli F., 2018, Using transcriptome sequencing and pooled exome capture to study local adaptation in the giga-genome of Pinus cembra, Molecular Ecology Resource, 19(2): 536-551. https://doi.org/10.1111/1755-0998.12986 PMid:30575305 Stevens K., Wegrzyn J., Zimin A., Puiu D., Crepeau M., Cardeño C., Paul R., Gonzalez-Ibeas D., Koriabine M., Holtz-Morris A., Martínez-García P., Sezen U., Marçais G., Jermstad K., McGuire P., Loopstra C., Davis J., Eckert A., Jong P., Yorke J., Salzberg S., Neale D., and Langley C., 2016, Sequence of the sugar pine megagenome, Genetics, 204(4): 1613-1626. https://doi.org/10.1534/genetics.116.193227 PMid:27794028 PMCid:PMC5161289 Telfer E., Graham N., Macdonald L., Li Y., Klápště J., Resende M., Neves L., Dungey H., and Wilcox P., 2019, A high-density exome capture genotype-by-sequencing panel for forestry breeding in Pinus radiata, PLoS One, 14(9): e0222640. https://doi.org/10.1371/journal.pone.0222640 PMid:31568509 PMCid:PMC6768539 Wang J., Lu N., Yi F., and Xiao Y., 2020, Identification of transposable elements in conifer and their potential application in breeding, Evolutionary Bioinformatics, 16: 1176934320930263. https://doi.org/10.1177/1176934320930263 PMid:32595272 PMCid:PMC7297469 Westbrook J., Resende Jr M., Muñoz P., Walker A., Wegrzyn J., Nelson D., Neale D., Kirst M., Huber D., Gezan S., Peter G., and Davis J., 2013, Association genetics of oleoresin flow in loblolly pine: discovering genes and predicting phenotype for improved resistance to bark beetles and bioenergy potential, The New Phytologist, 199(1): 89-100. https://doi.org/10.1111/nph.12240 PMid:23534834

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