MPB_2025v16n2

Molecular Plant Breeding 2025, Vol.16, No.2, 125-132 http://genbreedpublisher.com/index.php/mpb 132 Leaché A.D., and Oaks J.R., 2017, The utility of single nucleotide polymorphism (SNP) data in phylogenetics, Annual Review of Ecology, Evolution, and Systematics, 48: 69-84. https://doi.org/10.1146/annurev-ecolsys-110316-022645 Li J.X., 2024, Genetic diversity and conservation strategies of apple germplasm resources, Tree Genetics and Molecular Breeding, 14(1): 1-7. Li J., Lühmann A., Weissleder K., and Stich B., 2011, Genome-wide distribution of genetic diversity and linkage disequilibrium in elite sugar beet germplasm, BMC Genomics, 12: 484. https://doi.org/10.1186/1471-2164-12-484 Lu Y., Yan J., Guimarães C., Taba S., Hao Z., Gao S., Chen S., Li J., Zhang S., Vivek B., Magorokosho C., Mugo S., Makumbi D., Parentoni S., Shah T., Rong T., Crouch J., and Xu Y., 2009, Molecular characterization of global maize breeding germplasm based on genome-wide single nucleotide polymorphisms, Theoretical and Applied Genetics, 120: 93-115. https://doi.org/10.1007/s00122-009-1162-7 Mondal R., Kumar A., and Gnanesh B.N., 2023, Crop germplasm: current challenges, physiological-molecular perspective, and advance strategies towards development of climate-resilient crops, Heliyon, 9(1): e12973. https://doi.org/10.1016/j.heliyon.2023.e12973 Moragues M., Comadran J., Waugh R., Milne I., Flavell A., and Russell J., 2010, Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data, Theoretical and Applied Genetics, 120: 1525-1534. https://doi.org/10.1007/s00122-010-1273-1 Nkhata W., Shimelis H., Melis R., Chirwa R., Mzengeza T., Mathew I., and Shayanowako A., 2020, Population structure and genetic diversity analyses of common bean germplasm collections of East and Southern Africa using morphological traits and high-density SNP markers, PloS One, 15(12): e0243238. https://doi.org/10.1371/journal.pone.0243238 Reeves P., Tetreault H., and Richards C., 2020, Bioinformatic extraction of functional genetic diversity from heterogeneous germplasm collections for crop improvement, Agronomy, 10(4): 593. https://doi.org/10.3390/agronomy10040593 Thurow L., Gasic K., Raseira M., Bonow S., and Castro C., 2019, Genome-wide SNP discovery through genotyping by sequencing, population structure, and linkage disequilibrium in Brazilian peach breeding germplasm, Tree Genetics & Genomes, 16: 10. https://doi.org/10.1007/s11295-019-1406-x Upadhyaya H.D., Dwivedi S.L., Sharma S., Lalitha N., Singh S., Varshney R.K., and Gowda C.L.L., 2014, Enhancement of the use and impact of germplasm in crop improvement, Plant Genetic Resources, 12(S1): S155-S159. https://doi.org/10.1017/S1479262114000458 Wang M., Yang S., Liu W., Cao Z., Chen L., Liu W., Xie D., Yan J., Jiang B., and Peng Q., 2023, Fine mapping and candidate gene analysis of gynoecy trait in chieh-qua (Benincasa hispida Cogn. var. chieh-qua How), Frontiers in Plant Science, 14: 1158735. https://doi.org/10.3389/fpls.2023.1158735 Wang X., Bao K., Reddy U., Bai Y., Hammar S., Jiao C., Wehner T., Ramírez-Madera A., Weng Y., Grumet R., and Fei Z., 2018, The USDA cucumber (Cucumis sativus L.) collection: genetic diversity, population structure, genome-wide association studies, and core collection development, Horticulture Research, 5: 64. https://doi.org/10.1038/s41438-018-0080-8 Wang Y., Wu X., Li Y., Feng Z., Mu Z., Wang J., Wu X., Wang B., Lu Z., and Li G., 2021, Identification and validation of a core single-nucleotide polymorphism marker set for genetic diversity assessment, fingerprinting identification, and core collection development in bottle gourd, Frontiers in Plant Science, 12: 747940. https://doi.org/10.3389/fpls.2021.747940 Zhang X., Zhang H., Li L., Lan H., Ren Z., Liu D., Wu L., Liu H., Jaqueth J., Li B., Pan G., and Gao S., 2016, Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers, BMC Genomics, 17: 697. https://doi.org/10.1186/s12864-016-3041-3

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