MPB_2024v15n4

Molecular Plant Breeding 2024, Vol.15, No.4, 155-166 http://genbreedpublisher.com/index.php/mpb 165 Ma H., Schulze S.R., Lee S., Yang M., Mirkov T.E., Irvine J.E., Moore P.H., and Paterson A.H., 2004, An EST survey of the sugarcane transcriptome, Theoretical and Applied Genetics, 108: 851-863. https://doi.org/10.1007/s00122-003-1510-y PMid:14647901 Manimekalai R., Suresh G., Kurup H., Athiappan S., and Kandalam M., 2020, Role of NGS and SNP genotyping methods in sugarcane improvement programs, Critical Reviews in Biotechnology, 40: 865-880. https://doi.org/10.1080/07388551.2020.1765730 PMid:32508157 Meena M., Appunu C., Kumar R., Manimekalai R., Vasantha S., Krishnappa G., Kumar R., Pandey S., and Hemaprabha G., 2022, Recent advances in sugarcane genomics, physiology, and phenomics for superior agronomic traits, Frontiers in Genetics, 13: 854936. https://doi.org/10.3389/fgene.2022.854936 PMid:35991570 PMCid:PMC9382102 Mikheenko A., Prjibelski A., Saveliev V., Antipov D., and Gurevich A., 2018, Versatile genome assembly evaluation with QUAST-LG, Bioinformatics, 34: i142-i150. https://doi.org/10.1093/bioinformatics/bty266 PMid:29949969 PMCid:PMC6022658 Ming R., Wang Y., Draye X., Moore P., Irvine J., and Paterson A., 2002, Molecular dissection of complex traits in autopolyploids: mapping QTLs affecting sugar yield and related traits in sugarcane, Theoretical and Applied Genetics, 105: 332-345. https://doi.org/10.1007/s00122-001-0861-5 PMid:12582536 Okura V., Souza R., Tada S., and Arruda P., 2016, BAC-Pool sequencing and assembly of 19 Mb of the complex sugarcane genome, Frontiers in Plant Science, 7: 342. https://doi.org/10.3389/fpls.2016.00342 PMid:27047520 PMCid:PMC4804495 Oz M.T., Altpeter A., Karan R., Merotto A., and Altpeter F., 2021, CRISPR/Cas9-mediated multi-allelic gene targeting in sugarcane confers herbicide tolerance, Front Genome Ed., 3: 673566. https://doi.org/10.3389/fgeed.2021.673566 PMid:34713261 PMCid:PMC8525412 Riaño-Pachón D.M., and Mattiello L., 2017, Draft genome sequencing of the sugarcane hybrid SP80-3280, F1000Research, 6: 861. https://doi.org/10.12688/f1000research.11859.2 PMid:28713559 PMCid:PMC5499785 Saavedra-Díaz C., Trujillo-Montenegro J.H., Jaimes H.A., Londoño A., Villareal F.A.S., López L.O., Valens C.A.V., López-Gerena J., Riascos J.J., Quevedo Y.M., and Aguilar F.S., 2024, Genetic association analysis in sugarcane (Saccharumspp.) for sucrose accumulation in humid environments in Colombia, BMC Plant Biol., 24: 570. https://doi.org/10.1186/s12870-024-05233-y PMid:38886648 PMCid:PMC11184777 Satpathy S., Shahi D., Blanchard B., Pontif M., Gravois K., Kimbeng C., Hale A., Todd J., Rao A., and Baisakh N., 2022, Evaluation of models for utilization in genomic prediction of agronomic traits in the Louisiana sugarcane breeding program, Agriculture, 12(9): 1330. https://doi.org/10.3390/agriculture12091330 Setta N., Monteiro-Vitorello C., Metcalfe C., Cruz G., Bem L., Vicentini R., Nogueira F., Campos R., Nunes S., Turrini P., Vieira A., Cruz E., Corrêa T., Hotta C., Varani A., Vautrin S., Trindade A., Vilela M., Lembke C., Sato P., Andrade R., Nishiyama M., Cardoso-Silva C., Scortecci K., Garcia A., Carneiro M., Kim C., Paterson A., Bergès H., D’Hont A., Souza A., Souza G., Vincentz M., Kitajima J., and Sluys M., 2014, Building the sugarcane genome for biotechnology and identifying evolutionary trends, BMC Genomics, 15: 540. https://doi.org/10.1186/1471-2164-15-540 PMid:24984568 PMCid:PMC4122759 Sharma A., Song J., Lin Q., Singh R., Ramos N., Wang K., Zhang J., Ming R., and Yu Q., 2018, Comparative analysis of homologous sequences of Saccharum officinarumandSaccharum spontaneumreveals independent polyploidization events, Frontiers in Plant Science, 9: 1414. https://doi.org/10.3389/fpls.2018.01414 PMid:30319674 PMCid:PMC6167920 Shearman J.R., Pootakham W., Sonthirod C., Naktang C., Yoocha T., Sangsrakru D., Jomchai N., Tongsima S., Piriyapongsa J., Ngamphiw C., Wanasen N., Ukoskit K., Punpee P., Klomsa-ard P., Sriroth K., Zhang J., Zhang X., Ming R., Tragoonrung S., and Tangphatsornruang S., 2022, A draft chromosome-scale genome assembly of a commercial sugarcane, Scientific Reports, 12: 20474. https://doi.org/10.1038/s41598-022-24823-0 PMid:36443360 PMCid:PMC9705387 Singh R.K., and Singh S.P., 2015, Prospects of functional genomics in sugarcane, In: Al-Khayri J., Jain S., and Johnson D. (eds.), Advances in plant breeding strategies: breeding, biotechnology and molecular tools, Springer, Cham, Switzerland, pp.489-511. Singh R.K., Singh S.P., Tiwari D.K., Srivastava S., Singh S.B., Sharma M.L., Singh R., Mohapatra T., and Singh N.K., 2013, Genetic mapping and QTL analysis for sugar yield-related traits in sugarcane, Euphytica, 191: 333-353.

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