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表
1
中国旱稻地方品种籼亚种
SSR
位点遗传多态性
Table 1 Genetic polymorphism of SSR loci in
indica
upland rice landraces in China
SSR
位点
染色体
前引物
(5'→3')
后引物
(5'→3')
检测到的等位基因数
有效等位基因数
香农指数
SSR loci Chr.
Forward primer (5'→3')
Reverse primer (5'→3')
Observed number of alleles (
Na
) Effective number of alleles (
Ne
) Shannon's information Index (
I
)
RM5
1
TGCAACTTCTAGCTGCTCGA
GCATCCGATCTTGATGGG
10
4.746
1.841
RM29
1
TCTCTCCGGAGCCAAGGCGAGG CGAGCCACGACGCGATGTACCC 4
2.235
0.938
RM220
1
GGAAGGTAACTGTTTCCAAC
GAAATGCTTCCCACATGTCT
10
3.561
1.678
RM246
1
GAGCTCCATCAGCCATTCAG
CTGAGTGCTGCTGCGACT
9
4.783
1.786
RM302
1
TCATGTCATCTACCATCACAC
ATGGAGAAGATGGAATACTTGC 11
7.422
2.221
RM529
1
CCCTCCCTTCTGTAAGCTCC
GAAGAACAATGGGGTTCTGG
6
2.599
1.143
RM208
2
TCTGCAAGCCTTGTCTGATG
TAAGTCGATCATTGTGTGGACC
7
4.421
1.651
RM211
2
CCGATCTCATCAACCAACTG
CTTCACGAGGATCTCAAAGG
7
2.182
1.047
RM213
2
ATCTGTTTGCAGGGGACAAG
AGGTCTAGACGATGTCGTGA
6
3.186
1.412
RM240
2
CCTTAATGGGTAGTGTGCAC
TGTAACCATTCCTTCCATCC
9
3.650
1.577
RM341
2
CAAGAAACCTCAATCCGAGC
CTCCTCCCGATCCCAATC
10
5.179
1.964
RM438
2
CTTATCCCCCCGTCTCTCTC
CTCTCTGCCACCGATCCTAC
8
3.901
1.683
RM135
3
CTCTGTCTCCTCCCCCGCGTCG
TCAGCTTCTGGCCGGCCTCCTC
5
2.762
1.205
RM232
3
CCGGTATCCTTCGATATTGC
CCGACTTTTCCTCCTGACG
13
6.452
2.222
RM282
3
CTGTGTCGAAAGGCTGCAC
CAGTCCTGTGTTGCAGCAAG
5
3.605
1.393
RM411
3
ACACCAACTCTTGCCTGCAT
TGAAGCAAAAACATGGCTAGG
5
2.498
1.081
RM442
3
CTTAAGCCGATGCATGAAGG
ATCCTATCGACGAATGCACC
6
2.534
1.127
RM523
3
AAGGCATTGCAGCTAGAAGC
GCACTTGGGAGGTTTGCTAG
5
2.020
0.941
RM119
4
CATCCCCCTGCTGCTGCTGCTG
CGCCGGATGTGTGGGACTAGCG 5
2.671
1.170
RM241
4
GAGCCAAATAAGATCGCTGA
TGCAAGCAGCAGATTTAGTG
15
7.896
2.356
RM280
4
ACACGATCCACTTTGCGC
TGTGTCTTGAGCAGCCAGG
9
3.736
1.633
RM471
4
ACGCACAAGCAGATGATGAG
GGGAGAAGACGAATGTTTGC
10
4.463
1.833
RM518
4
CTCTTCACTCACTCACCATGG
ATCCATCTGGAGCAAGCAAC
10
5.067
1.844
RM551
4
AGCCCAGACTAGCATGATTG
GAAGGCGAGAAGGATCACAG
12
5.826
2.095
RM178
5
TCGCGTGAAAGATAAGCGGCGC GATCACCGTTCCCTCCGCCTGC
4
2.016
0.824
RM305
5
TACTGCCAAAGGCGAGCTTC
GTGAGAGGCTACAGCTAACC
3
2.058
0.754
RM413
5
GGCGATTCTTGGATGAAGAG
TCCCCACCAATCTTGTCTTC
11
3.762
1.647
RM509
5
TAGTGAGGGAGTGGAAACGG
ATCGTCCCCACAATCTCATC
6
1.997
0.976
RM534
5
ACAAAACCAAGGGCCTAACC
CTTCGTGCGAGCCATCTC
3
1.901
0.702