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表
1
中国旱稻地方品种粳亚种
SSR
位点遗传多态性
Table 1 Genetic polymorphism of SSR loci in
japonica
upland rice landraces of China
SSR
位点
SSR loci
染色体
Chr.
前引物
(5’→3’)
Forward primer (5’→3’)
后引物
(5’→3’)
Reverse primer (5’→3’)
检测到的等位基因数
Observed number of alleles
(
Na
)
有效等位基因数
Effective number of alleles
(
Ne
)
香农指数
Shannon's information Index
(
I
)
RM5
1
TGCAACTTCTAGCTGCTCGA
GCATCCGATCTTGATGGG
9
4.793
1.826
RM29
1
TCTCTCCGGAGCCAAGGCGAGG
CGAGCCACGACGCGATGTACCC
5
3.109
1.313
RM220
1
GGAAGGTAACTGTTTCCAAC
GAAATGCTTCCCACATGTCT
13
6.564
2.150
RM246
1
GAGCTCCATCAGCCATTCAG
CTGAGTGCTGCTGCGACT
10
3.832
1.675
RM302
1
TCATGTCATCTACCATCACAC
ATGGAGAAGATGGAATACTTGC
11
3.629
1.660
RM529
1
CCCTCCCTTCTGTAAGCTCC
GAAGAACAATGGGGTTCTGG
7
5.175
1.782
RM208
2
TCTGCAAGCCTTGTCTGATG
TAAGTCGATCATTGTGTGGACC
7
4.420
1.651
RM211
2
CCGATCTCATCAACCAACTG
CTTCACGAGGATCTCAAAGG
5
1.380
0.445
RM213
2
ATCTGTTTGCAGGGGACAAG
AGGTCTAGACGATGTCGTGA
7
2.868
1.239
RM240
2
CCTTAATGGGTAGTGTGCAC
TGTAACCATTCCTTCCATCC
9
1.577
0.749
RM341
2
CAAGAAACCTCAATCCGAGC
CTCCTCCCGATCCCAATC
9
2.707
1.320
RM438
2
CTTATCCCCCCGTCTCTCTC
CTCTCTGCCACCGATCCTAC
8
5.041
1.847
RM135
3
CTCTGTCTCCTCCCCCGCGTCG
TCAGCTTCTGGCCGGCCTCCTC
7
3.132
1.253
RM232
3
CCGGTATCCTTCGATATTGC
CCGACTTTTCCTCCTGACG
16
9.370
2.517
RM282
3
CTGTGTCGAAAGGCTGCAC
CAGTCCTGTGTTGCAGCAAG
4
1.467
0.534
RM411
3
ACACCAACTCTTGCCTGCAT
TGAAGCAAAAACATGGCTAGG
5
1.810
0.825
RM442
3
CTTAAGCCGATGCATGAAGG
ATCCTATCGACGAATGCACC
6
2.725
1.201
RM523
3
AAGGCATTGCAGCTAGAAGC
GCACTTGGGAGGTTTGCTAG
5
3.566
1.395
RM119
4
CATCCCCCTGCTGCTGCTGCTG
CGCCGGATGTGTGGGACTAGCG
4
1.424
0.491
RM241
4
GAGCCAAATAAGATCGCTGA
TGCAAGCAGCAGATTTAGTG
16
8.257
2.442
RM280
4
ACACGATCCACTTTGCGC
TGTGTCTTGAGCAGCCAGG
6
1.433
0.550
RM471
4
ACGCACAAGCAGATGATGAG
GGGAGAAGACGAATGTTTGC
9
3.056
1.461
RM518
4
CTCTTCACTCACTCACCATGG
ATCCATCTGGAGCAAGCAAC
8
3.365
1.463
RM551
4
AGCCCAGACTAGCATGATTG
GAAGGCGAGAAGGATCACAG
13
4.375
1.982
RM178
5
TCGCGTGAAAGATAAGCGGCGC
GATCACCGTTCCCTCCGCCTGC
3
1.483
0.479
RM305
5
TACTGCCAAAGGCGAGCTTC
GTGAGAGGCTACAGCTAACC
3
1.524
0.510
RM413
5
GGCGATTCTTGGATGAAGAG
TCCCCACCAATCTTGTCTTC
8
2.023
1.106
RM509
5
TAGTGAGGGAGTGGAAACGG
ATCGTCCCCACAATCTCATC
8
3.646
1.556