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PlantSecKB: the Plant Secretome and Subcellular Proteome KnowledgeBase
9
Continuing Table 4
(b) Molecular Function
At (%)
Pt (%) Sl (%)
Bd (%) Osj (%) Zm (%) Pp (%) Sm (%)
GO:0016740 transferase activity
135 (7) 122 (9) 107 (8) 97 (7)
191 (9) 116 (9) 27 (7)
75 (9)
GO:0000166 nucleotide binding
92 (4)
103 (7) 82 (6)
74 (5)
166 (8) 85 (6)
21 (5)
51 (6)
GO:0030234 enzyme regulator activity
61 (3)
29 (2)
53 (4)
28 (2)
42 (2)
23 (2)
2 (0)
2 (0)
GO:0005102 receptor binding
57 (3)
11 (1)
7 (1)
10 (1)
17 (1)
10 (1)
2 (0)
8 (1)
GO:0016301 kinase activity
51 (2)
72 (5)
55 (4)
45 (3)
106 (5) 49 (4)
13 (3)
40 (5)
GO:0004871 signal transducer activity
43 (2)
14 (1)
11 (1)
13 (1)
23 (1)
13 (1)
3 (1)
9 (1)
GO:0030246 carbohydrate binding
41 (2)
33 (2)
24 (2)
37 (3)
54 (2)
29 (2)
8 (2)
14 (2)
GO:0008289 lipid binding
27 (1)
19 (1)
26 (2)
18 (1)
23 (1)
14 (1)
1 (0)
7 (1)
others
47 (2)
44 (3)
22 (2)
16 (1)
43 (2)
32 (2)
15 (4)
14 (2)
total
2047
1396 1333 1364 2181 1309 404
841
Note: At:
Arabidopsis thaliana
; Pt:
Populus trichocarpa
; Sl:
Solanum lycopersicum
; Monocots - Bd:
Brachypodium distachyon
; Osj:
Oryza sativa
(subsp. japonica); Zm:
Zea mays
. Mosses -
Physcomitrella patens
(subsp. patens); Sm:
Selaginella moellendorffii
Table 5 Comparison of protein families in secretomes of representative plant species
Dicots
Monocots
Mosses
Pfam ID
At
Pt
Sl
Bd Osj
Zm Pp Sm
Pfam name
Pfam discription
pfam00657 90 61 52 51 76 48 9 42 Lipase_GDSL GDSL-like Lipase/Acylhydrolase
pfam00141 73 58 82 119 151 91 22 51 peroxidase
Peroxidase
pfam04043 63 38 27 26 40 28 0 0 PMEI
Plant invertase/pectin methylesterase
inhibitor
pfam05617 56 10 5 3
5 2 0 0 Prolamin_like Prolamin-like
pfam00450 54 30 42 41 57 23 7 13 Peptidase_S10 Serine carboxypeptidase
pfam01095 52 24 37 16 26 13 5 5 Pectinesterase Pectinesterase
pfam05938 52 13 13 0
0 0 2 0 Self-incomp_S1 Plant self-incompatibility proteinS1
pfam00295 49 30 35 29 30 32 1 4 Glyco_hydro_28 Glycosyl hydrolases family 28
pfam01657 45 22 5 9 31 5 0 8 Stress-antifung Salt stress response/antifungal
pfam00026 41 30 38 36 65 41 3 6 Asp
Eukaryotic aspartyl protease
pfam00332 37 25 22 24 43 28 3 11 Glyco_hydro_17 Glycosyl hydrolases family 17
pfam00190 35 40 38 35 56 25 12 25 Cupin_1
Cupin
pfam00722 34 22 28 26 34 29 8 10 Glyco_hydro_16 Glycosyl hydrolases family 16
pfam00232 33 11 12 21 42 9 2 12 Glyco_hydro_1 Glycosyl hydrolase family 1
pfam00234 31 16 37 20 42 34 1 2 Tryp_alpha_amyl Protease inhibitor/seed storage/LTP
pfam01357 30 19 26 54 70 49 14 9 Pollen_allerg_1 Pollen allergen
pfam00082 30 18 44 40 39 22 1 18 Peptidase_S8 Subtilase family
pfam03080 29
2 16 5 25 9 0 6 DUF239
Domain of unknown function (DUF239)
pfam01190 27 24 15 28 47 24 1 11 Pollen_Ole_e_I Pollen proteins Ole e I like
pfam00112 27 19 23 26 47 27 10 11 Peptidase_C1 Papain family cysteine protease
pfam05498 27 10 7 10 12 14 0 1 RALF
RapidALkalinization Factor (RALF)
pfam01565 26 32 21 17 15 8 1 22 FAD_binding_4 FAD binding domain
pfam07983 26
7
7 9 14 17 0 2 X8
X8 domain
pfam07732 24 40 28 32 43 20 5 8 Cu-oxidase_3 Multicopper oxidase
pfam00149 24
8 12 14 17 10 6 8 Metallophos
Calcineurin-like phosphoesterase
pfam07333 24
0
0 0
1 0 0 0 SLR1-BP
S locus-relatedglycoprotein1bindingpollen
pfam00759 22 10 11 17 26 9 5 7 Glyco_hydro_9 Glycosyl hydrolase family 9
pfam09770 20
5
9 22 12 24 2 12 PAT1
Topoisomerase II-associatedproteinPAT1
pfam03018 19 19 21 30 49 17 2 9 Dirigent
Dirigent-like protein
pfam00188 18
9 12 10 29 9 5 5 CAP
Cysteine-rich secretory protein family
pfam08263 16 30 11 10 37 12 6 5 LRRNT_2
Leucine rich repeat N-terminal domain
pfam14368 15 25 10 15 24 13 7 3 LTP_2
Probable lipid transfer
Computational
Molecular Biology