Molecular Plant Breeding 2016, Vol.7, No.10, 1-17
9
assisted selection. Relatively speaking, SSRs have most of the desirable features and thus are the current marker
of choice for many crops. The use of SNP markers in MAS programs has been growing faster and so the
development of technologies and platforms for the discovery of SNPs is important task in many crops. The
application of sequence-based genotyping for a whole range of diversity and genomic studies will have an
important place well into the future.
References
Abdalla A.M., Reddy O.U.K., El-Zik K.M., and Pepper A.E., 2001, Genetic diversity and relationships of diploid and tetraploid cottons revealed using AFLP.,
Theoretical and Applied Genetics, 102(2-3): 222-229
Abdurakhmonov I.Y., Buriev Z., Shermatov S., Abdullaev A., Kushanov F., Abdukarimov A., Percy, R., et al., 2012, Cotton genomics and transgenomics in
Uzbekistan, Proceedings of The International Cotton Genome Initiative 2012 Conference
Abdurakhmonov I.Y., Buriev Z.T., Shermatov S.E. et al., 2011, Marker-assisted selection for complex fiber traits in cotton, 5th World Cotton Research
Conference, Spaecial session of ICGI, Mumbai, India
Abdurakhmonov I.Y., Kohel R.J., Yu J.Z., Pepper A.E., Abdullaev A.A., Kushanov F.N., Salakhutdinov I.B., Buriev Z.T., Saha S., Scheffler B.E., Jenkins J.N.,
and Abdukarimov A., 2008, Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm, Genomics, 92(6):
478-487
Abdurakhmonov I.Y., Saha S., Jenkins J.N., Buriev Z.T., Shermatov S.E., Scheffler B.E., Pepper A.E., Yu J.Z., and Kohel R.J., 2009, Linkage disequilibrium
based association mapping of fiber quality traits in G. hirsutum L. variety germplasm, Genetica, 136(3):401-417
Ablet G., Hill H., and Henary R.J., 2006, Sequence polymorphism discovery in wheat microsatellite flanking regions using pyrophosphate sequencing,
Molecular Breeding, 17(3): 281-289
Agarwal M., Shrivastava N., and Padh H., 2008, Advances in molecular marker techniques and their applications in plant sciences, Plant Cell Reports, 27(4):
617-631
Altaf M.K., Stewart J.M., Wajahatullah M.K., Zhang J.F., and Cantrell R.G., 1997, Molecular and morphological genetics of a trispecies F2 population of cotton,
In: Dugger P., and Richter D.A., (eds.), Reprinted from the Proceedings of the Beltwide Cotton, National Cotton Council, Memphis TN, San Diego
California, USA, pp.448-452
Andersen J.R., and Lubberstedt T., 2003, Functional markers in plants, Trends in Plant Science, 8(11):554-560
Appleby N., Edwards D., and Batley J., 2009, New technologies for ultra-high throughput genotyping in plants, Methods in Molecular Biology, 513:19-39
Arunita R., Rakshit S., Santhy V., Gotmare V.P., et al., 2010, Evaluation of SSR markers for the assessment of genetic diversity and fingerprinting of
Gossypium hirsutum
accessions. J. Plant Biochem. Biot. 19: 153-160
Aslam M., Jiang C., Wright R., and Paterson A.H., 1999, Identification of molecular markers linked to leaf curl virus disease resistance in cotton, Pakistan
Journal Biological Sciences, 2(1): 124-126
Ayeh K.O., 2008, Expressed sequence tags (ESTs) and single nucleotide polymorphisms (SNPs): Emerging molecular marker tools for improving agronomic
traits in plant biotechnology, African Journal of Biotechnology, 7(4): 331-341
Baird N.A., Etter. P.D., Atwood T.S., Currey M.C., Shiver A.L., Lewis Z.A., Selker E.U., Cresko W.A., Johnson E.A.,and 2008, Rapid SNP discovery and
genetic mapping using sequenced RAD markers, PLoS One, 3(10)
Batley J., and Edwards D., 2007, SNP applications in plants, In: Oraguzie N.C., Rikkerink E.H.A., Gardiner S.E., and Silva D., (eds.), Association Mapping in
Plants, Springer, NY, pp.95-102
Beasley J.O., 1940, The origin of American tetraploid Gossypium species, American Naturalist, 74: 285-286
Berard A., Le Paslier M.C., Dardevet M., Exbrayat V.F., Bonnin I., Cenci A., Haudry A., Brunel D., and Ravel C., 2009, High-throughput single nucleotide
polymorphism genotyping in wheat (Triticum spp.), Plant Biotechnology Journal, 7(4): 364-374
Bernardo R., 2008, Molecular markers and selection for complex traits in plants: learning from the last 20 years, Crop Science, 48(5): 1649-1664
Bidichandani S.I., Ashizawa T., and Patel P.I., 1998, The GAA triplet-repeat expansion in Friedreich ataxia interferes with transcription and may be associated
with an unusual DNA structure, The American Journal of Human Genetics, 62(1): 111-121
