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Computational Molecular Biology 2014, Vol. 4, No. 14, 1-9
http://cmb.biopublisher.ca
4
Table 2 Physico-chemical characterization of enzymes
Enzymes Molecular
weight
Theoretical
PI
Total no.
of atoms
Extinction
Coefficient
assuming all pair of CYS
residues from CYS
Extinction Coefficient
assuming all CYS
residues are reduced
Instability index Aliphatic
index
A2XNV3 10056.6 9.05
1917
10095
9970
50.27
109.16
Q4ADV8 60021.1 6.15
8408
77600
77350
37.76
87.98
Q5JLP4 58426.8 7.37
8219
69120
68870
37.30
91.98
Q8LNV6 58428.7 8.19
8194
68215
67840
49.91
93.06
Q9FUJ1 57975.5 5.02
8091
84840
84340
39.85
86.64
Q9FUJ3 55583.0 7.17
7894
68090
67840
39.14
100.54
Q67YU0 60423.7 6.00
8493
81610
81361
35.84
90.02
Q9T0N8 57228.8 5.94
8010
81945
81820
35.44
89.63
Q9LY71 59999.7 8.94
8487
82070
81820
43.83
95.48
Q9LTS3 59422.7 6.33
8324
95800
95800
42.57
86.23
Table 3 Information about the positively and negatively charged residues of all enzymes
Enzymes
GRAVY
Total number of negatively charged residues
Total number of positively charged residues
A2XNV3
0.359
57
49
Q4ADV8
0.026
57
52
Q5JLP4
-0.095
52
52
Q8LNV6
-0.035
52
45
Q9FUJ1
-0.145
69
50
Q9FUJ3
-0.040
53
35
Q67YU0
-0.195
65
55
Q9T0N8
0.059
50
45
Q9LY71
-0.150
51
58
Q9LTS3
-0.228
59
55
Table 4 Domains of proteins
Enzymes
Start-end positions
Domain names
A2XNV3
51-238
FAD binding PCMH type
Q4ADV8
74-255
FAD binding PCMH type
Q5JLP4
63-244
FAD binding PCMH type
Q8LNV6
52-231
FAD binding PCMH type
Q9FUJ1
58-238
FAD binding PCMH type
Q9FUJ3
53-226
FAD binding PCMH type
Q67YU0
63-241
FAD binding PCMH type
Q9T0N8
65-245
FAD binding PCMH type
Q9LY71
68-248
FAD binding PCMH type
Q9LTS3
66-243
FAD binding PCMH type
Table 5 The secondary structural analysis of all enzymes
Enzymes
Helices
Sheets
Turns
A2XNV3
375= 70.5%
212= 39.8%
62= 11.7%
Q4ADV8
424= 75.0%
181= 32.0%
63= 11.2%
Q5JLP4
382= 72.2%
331= 62.6%
62= 11.7%
Q8LNV6
328= 62.2%
237= 45.0%
59= 11.2%
Q9FUJ1
350= 66.8%
354= 63.7%
64= 12.2%
Q9FUJ3
348= 69.5%
238= 47.5%
72= 14.4%
Q67YU0
394= 73.0%
224= 41.5%
77= 14.3%
Q9T0N8
366= 68.5%
185= 34.5%
61=11.4%
Q9LY71
399= 74.9%
366= 68.7%
63= 11.8%
Q9LTS3
364= 69.6%
252= 48.2%
72= 13.8%