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Computational Molecular Biology 2014, Vol. 4, No. 11 1-13
http://cmb.biopublisher.ca
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5 References
This section contains list of papers, online site, and
books etc which were considered for creating this
database.
6 Contact Us
This section contain contact us form in which user can
send any questions to us.
7 Conclusion
Database designing of Leguminosae family members
in Gujarat state was taken up with following
objectives keeping in mind. Like,
To bridge the botanical information with the
Bioinformatics information and analysis.
To utilize various tools of Bioinformatics for
analytical purpose for the Leguminosae family
species.
To generate secondary information from above
work with the help of various tools and software
available.
To provide Bioinformatics information for
general public in the form of database.
A comprehensive database for Leguminosae family
titled as “Gujarat state Leguminosae family Database
(GLDB)” was created with useful information of each
species of Leguminosae family.
There are many inbuilt tools developed in this
database to get information of particular species like
it’s full botanical information along with Distribution
of each species of Leguminosae family in Gujarat
state with Google map.
While Bioinformatics section comprises of many tools
like one tool was designed to get particular species’
DNA, PROTEIN, GENOME etc. information from
NCBI database and ConSeq Tool designed to find out
any conserved sequences. RNA-Seq data analysis of
five Leguminosae family done with de novo sequence
assembly & annotation also done.
This particular database of Leguminosae family
has served the demands of the present botanical
scientific community. So far such information at
one platform is not available there by it will serve
the purpose of their needs too.
Various scattered data of such Leguminosae family
species are placed in such a manner that any person
who desire to find information of these particular
species will get at one touch or on mouse click.
References
G. L. Shah (1978): Flora of Gujarat State. Publ. by Sardar Patel University,
Vallabh Vidyanagar, Anand, India
G. M. Oza; Kishore S. Rajput (2006) Biodiversity of Gujarat Forest
Trees.Publ. By INSONA, Vadodara, India
Harborne, J.B. 1994. Phytochemistry of the Leguminosae. In Phytochemical
Dictionary of the Leguminosae, eds Bisby,F.A. et al. London: Chapman
& Hall
Heywood, V.H.(ed) 1993. Flowering Plants of the World. London: B T
Batsford
Hickey, M. & King, C. 1997. Common Families of Flowering Plants.
Cambridge: Cambridge University Press
J. L. Collins, J. P. Biggs, C. Voelckel and S. Joly, 2008, An approach to
transcriptome analysis of non-model organisms using short-read
sequences, Genome Informatics 21:3-14
Jean-Mchel Claverie and Cedric Notredame (2003) Bioinformatics – A
Beginner’s Guide. Publ. by Wiley Publishing, Inc. USA
Jianan Zhang, Shan Liang, Jialei Duan, Jin Wang, Silong Chen, Zengshu
Cheng, Qiang Zhang, Xuanqiang Liang and Yurong Li, 2012, De novo
assembly and Characterisation of the Transcriptome during seed
development, and generation of genic-SSR markers in Peanut (Arachis
hypogaea L.), BMC Genomics 2012 13:90
Kalpesh Anjaria (2002) Ph. D. Thesis: Floristic studies of Anand District.
Submitted to Sardar Patel University, Vallabh Vidyanagar, Anand, India
Libault, M., Joshi, T., Benedito, V.A., Xu, D., Udvardi, M.K., and Stacey, G.,
2009, Legume Transcription Factor Genes: What makes legumes so
special?. Plant Physiology 151: 991-1001
Mortazavi, A., Williams, B.A., McCue, K., Schaeffer, L., and Wold, B.,
2008. Mapping and quantifying mammalian transcriptomes by
RNA-Seq. Nat Methods. 5(7): 621-8
Ness, R.W., Siol, M., and Barrett S.C.H., 2011, De novo sequence assembly
and characterization of the floral transcriptome in cross and
self-fertilizing plants, BMC Genomics 12: 298
Patel RK, Jain M, 2012, NGS QC Toolkit: A Toolkit for Quality Control of
Next Generation Sequencing Data, PLoS ONE 7(2): e30619.
doi:10.1371/journal.pone.0030619
Patel, Anjaria, Panchal (2012) Leguminous Trees In Anand District:
Collection and Analysis With Bioinformatics Applications. LAP
LAMBERT Academic Publishing, Germany
Polhill, R.M. & Raven, P.H. (eds) 1981. Advances in Legume Systematics.
Royal Botanic Gardens, Kew
Rohini Garg, Ravi K. Patel, Akhilesh K. Tyagi, and Mukesh Jain., 2011, De
Novo Assembly of Chickpea Transcriptome Using Short Reads for
Gene Discovery and Marker Identification, DNA RESEARCH 18,
53–63; doi:10.1093/dnares/dsq028
Sagar Patel, Panchal H., 2013. Leguminobase: A Tool To Get Information
Of Some Leguminosae Family Members From NCBI Database in
Journal of Advanced Bioinformatics Applications and Research: Vol 4,