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org/10.1126/science.1099511 PMid:15567862
Li X.H., Wang K.J., and Jia J.Z., 2009, Genetic diversity and differentiation
of Chinese wild soybean germplasm (
G. soja
Sieb. & Zucc.) in
geographical scale revealed by SSR markers, Plant Breeding, 128(6):
658-664 http://dx.doi.org/10.1111/j.1439-0523.2009.01625.x
Liu K., and Muse S.V., 2005, PowerMarker: integrated analysis environment
for genetic marker data, Bioinformatics, 21(9): 2128-2129 http://dx.doi.
org/10.1093/bioinformatics/bti282 PMid:15705655
Mahapatra A.K., and Saha A., 2008, Genetic resources of jute and allied
fibre crops, In: Karmakar P.G., Hazra S.K., Ramasubramanian T.,
Mandal R.K., Sinha M.K., and Sen H.S., eds., Jute and allied fibre
updates, Central Research Institute for Jute and Allied Fibres, Kolkata,
pp.18-37
Malysheva-Otto L.V., Ganal M.W., and Röder M.S., 2006, Analysis of
molecular diversity, population structure and linkage disequilibrium in
a worldwide survey of cultivated barley germplasm (
Hordeum vulgare
L.), BMC Genetics, doi: 10.1186/1471.2156.7.6 http://dx.doi.org/10.
1186/1471.2156.7.6 PMid:16433922 PMCid:1408084
Mandel J.R., Dechaine J.M., Marek L.F., and Burke J.M., 2011, Genetic
diversity and population structure in cultivated sunflower and a
comparison to its wild progenitor,
Helianthus annus
L., Theoretical and
Applied Genetics, 123(5): 693-704 http://dx.doi.org/10.1007/s00122-
011-1619-3 PMid:21638000
Mazzucato A., Papa R., Bitocchi E., Mosconi P., Nanni L., Negri V.,
Picarella M.E., Siligato F., Soressi G.P., Tiranti B., and Veronesi F.,
2008, Genetic diversity, structure and marker-trait associations in a
collection of Italian tomato (
Solanum lycopersicum
L.) landraces,
Theoretical and Applied Genetics, 116(5): 657-669 http://dx.doi.org/10.
1007/s00122-007-0699-6 PMid:18193185
Ming H., Xie F., Chen L., Zhao X., Jojee L., and Madonna D., 2010,
Comparative analysis of genetic diversity and structure in rice using
ILP and SSR markers, Rice Science, 17(4): 257-268 http://dx.doi.
org/10.1016/S1672-6308(09)60025-1
Mir J.I., Karmakar P.G., Chattopadhyay S., Chaudhury S.K., Ghosh S.K.,
and Roy A., 2008a, SSR and RAPD profile based grouping of selected
jute germplasm with respect to fibre fineness trait, Journal of Plant
Biochemistry and Biotechnology, 17(1): 29-35
Mir R.R., Banerjee S., Das M., Gupta V., Tyagi A.K., Sinha M.K., Balyan
H.S., and Gupta P.K., 2009, Development and characterization of
large-scale simple sequence repeats in jute, Crop Science, 49(5):
1687-1694 http://dx.doi.org/10.2135/cropsci2008.10.0599
Mir R.R., Kumar J., Balyan H.S., and Gupta P.K., 2011, A study of genetic
diversity among Indian bread wheat (
Triticum aestivum
L.) cultivars
released during last 100 years, Genetic Resources and Crop Evolution,
doi: 10.1007/s10722.011.9713.6 http://dx.doi.org/10.1007/s10722.011.
9713.6
Mir R.R., Rustgi S., Sharma S., Singh R., Goyal A., Kumar J., Gaur A.,
Tyagi A.K., Khan H., Sinha M.K., Balyan H.S., and Gupta P.K., 2008b,
A preliminary genetic analysis for fibre traits and the use of new
genomic SSRs for genetic diversity in jute, Euphytica, 161(3): 413-427
http://dx.doi.org/10.1007/s10681-007-9597-x
Mondal R., 2000, Diversified jute products, Published by International Jute
Organization (IJO), Dhaka, Bangladesh, pp.115-118
Nei M., 1978, Estimation of average heterozygosity and genetic distances
from a small number of individuals, Genetics, 89(3): 583-590
Odeny D.A., Jayashree B., Ferguson M., Hoisington D., Crouch J., and
Gebhardt C., 2007, Development, characterization and utilization of
microsatellite markers in pigeonpea, Plant Breeding, 126(2): 130-136
http://dx.doi.org/10.1111/j.1439-0523.2007.01324.x
Palit P., Sasmal B.C., and Bhattacharya A.C., 1996, Germplasm diversity
and estimate of genetic advance of four morpho-physiological traits in
a world collection of jute, Euphytica, 90(1): 49-58
Patel G.I., and Datta R.M., 1960, Interspecific hybridization between
Corchorus olitorius
and
C. capsularis
and the cytogenetical basis of
incompatibility between them, Euphytica, 9(1): 89-110
Peakall R., and Smouse P.E., 2007, GENALEX 6.1: genetic analysis in
excel, population genetic software for teaching and research, Australian
National University, Canberra, Available via, 6(1): 288-295
Peakall R., Gilmore S., Keys W., Morgante M., and Rafalski A., 1998,
Cross-species amplification of soybean (
Glycine max
) simple sequence
repeats (SSRs) within the genus and other legume genera: implications
for the transferability of SSRs in plants, Mol. Biol. Evol., 15(10):
1275-1287
Perrier X., Flori A., and Bonnot F., 2003, Data analysis methods, In: Hamon
P., Seguin M., Perrier X., and Glaszmann J.C., (eds.), Genetic diversity
of cultivated tropical plants, Enfield, Science Publishers, Montpellier,
pp.43-76
Prasad M., Varshney R.K., Roy J.K., Balyan H.S., and Gupta P.K., 2000,
The use of microsatellites for detecting DNA polymorphism, genotype
identification and genetic diversity in wheat, Theoretical and Applied
Genetics, 100(3-4): 584-592 http://dx.doi.org/10.1007/s001229900102
http://dx.doi.org/10.1007/s001220050077
Pritchard J.K., Stephens M., and Donnelly P., 2000, Inference of population
structure using multilocus genotype data, Genetics, 155(2): 945-959
Pritchard J.K., and Wen W., 2003, Documentation for structure software:
Version 2, Available from http://pritch.bsd.uchicago.edu
Qi J., Zhou D., Wu W., Lin L., Wu J., and Fang P., 2003a, Application of
ISSR technology in genetic diversity detection of jute, Yingyong
Shengtai Xuebao, 14(9): 1473-1477
Qi J., Zhou D., Wu W., Lin L., Fang P., and Wu J., 2003b, The application of
RAPD technology in genetic diversity detection of Jute, Yichuan
Xuebao, 30(10): 926-932
Roder M.S., Korzun V., Wendehake K., Plaschke J., Tixier M.H., Leroy P.,
and Ganal M.W., 1998, A microsatellite map of wheat, Genetics,
149(4): 2007-2023
Rossetto M., 2001, Sourcing of SSR markers from related plant species, In:
Henry R.J., (ed.), Plant genotyping: the DNA fingerprinting of plants,
CABI Publishing, CAB International, Wallingford, UK, pp.211-224
http://dx.doi.org/10.1079/9780851995151.0211
Roy A., Bandyopadhyay A., Mahaptra A.K., Ghosh S.K., Singh N.K.,
Bansal K.C., Koundal K.R., and Mohapatra T., 2006, Evaluation of
genetic diversity in jute (
Corchorous
species) using STMS, ISSR and
RAPD markers, Plant Breeding, 125(3): 292-297 http://dx.doi.org/10.
1111/j.1439-0523.2006.01208.x
Saghai-Maroof M.A., Biyashev R.M., Yang G.P., Zhang Q., and Allard W.,
1994, Extraordinarily polymorphic microsatellite DNA in barley:
species diversity, chromosomal locations, and population dynamics,
Proc. Natl. Acad. Sci., USA , 91(12): 5466-5470 http://dx.doi.org/10.
1073/pnas.91.12.5466
Sarkar D., Kundu A., Saha A., Mondal N.A., Sinha M.K., and Mahapatra
B.S., 2011, First nuclear DNA amounts in diploid (2n=2x=14)
Corchorus
spp. by flow cytometry: genome sizes in the cultivated jute
species (
C. capsularis
L. and
C. olitorius
L.) are ~300% smaller than
the reported estimate of 1 100~1 350 Mb, Caryologia, 64(2): 146-152
Stephenson P., Bryan G., Kirby J., Collin A., Devos K., Busso C., and Gale
M., 1998, Fifity new microsatellites and development of chromosome