Page 12 - Molecular Plant Breeding

Basic HTML Version

Molecular Plant Breeding 2010, Vol.1 No.5
http://mpb.sophiapublisher.com
Page 9 of 10
germplasm
resources,
Int.
J.
Plant
Genomics,
doi:10.1155/2008/574927.
Agrama H.A.,
.C., an
W., 2007, Association mapping of
yield and its components in rice cultivars, Mol. Breed., 19: 341-356
Andersen J.R., Zein I., Wenzel G., Krützfeldt B., Eder J., Ouzunova M., and
Lübberstedt T., 2007, High levels of linkage disequilibrium and
associations with forage quality at a
Phenylalanine Ammonia-Lyase
locus in European maize (
Zea mays
L.) inbreds, Theor. Appl. Genet.,
114: 307-319
Araki E., Miura H., and Sawada S., 1999, Identification of genetic loci
affecting amylose content and agronomic traits on chromosome 4A of
wheat, Theor Appl Genet, 98: 977-984
Beló A., Zheng P.Z., Luck S., Shen B., Meyer D.J., Li B., Tingey S., and
Rafalski A., 2008, Whole genome scan detects an allelic variant of fad2
associated with increased oleic acid levels in maize, Mol. Genet.
Genomics, 279: 1-10
Börner A., Schumann E., Fürste A., Cöster H., Leithold B., Röder M., and
Weber W., 2002, Mapping of quantitative trait loci determining
agronomic important characters in hexaploid wheat (
Triticum aestivum
L.), Theor. Appl. Genet., 105: 921-936
Bradbury P.J., Zhang Z.W., Kroon D.E., Casstevens T.M., Ramdoss Y., and
Buckler E.S., 2007, TASSEL: software for association mapping of
complex traits in diverse samples, Bioinformatics, 23:2633-2635
Breseghello F., and Sorrells M.S., 2006, Association mapping of kernel size
and milling quality in wheat (
Triticum aestivum
L.) cultivars, Genetics,
172:1165-1177
Crossa J., Burgueno J., Dreisigacker S., Vargas M., Herrera-Foessel S. A.,
Lillemo M., Singh R. P., Trethowan R., Warburton M., Franco J.,
Reynolds M, Crouch J. H., and Ortiz R, 2007, Association analysis of
historical bread wheat germplasm using additive genetic covariance of
relatives and population structure, Genetics, 177: 1889-1913
Flint-Garcia S.A., Thornsberry J.M., and Buckler E.S., 2003, Structure of
linkage disequilibrium in plants, Annu. Rev. Plant. Biol., 54: 357-374
Flint-Garcia S.A., Thuillet A.C., Yu J, Pressoir G, Romero S.M., Mitchell
S.E., Doebley J, Kresovich S, Goodman M.M., and Buckler E.S., 2005,
Maize association population: a high-resolution platform for
quantitative trait locus dissection, Plant J., 44: 1054-1064
Gupta P.K., Rustgi S, and Kulwal P.L., 2005, Linkage disequilibrium and
association studies in higher plants: present status and future prospects,
Plant Mol. Biol., 57: 461-485.
Harjes C.E., Rocheford T.R., Bai L, Brutnell T.P., Kandianis C.B., Sowinski
S.G., Stapleton A.E., Vallabhaneni R, Williams M, Wurtzel E.T., Yan J,
and Buckler E.S., 2008, Natural genetic variation in lycopene epsilon
cyclase tapped for maize biofortifi cation, Science, 319: 330-333
Jantasuriyarat C., Vales M.I., Watson C.J.W., and Lizarazu O.R., 2004,
Identification and mapping of genetic loci affecting the free-threshing
habit and spike compactness in wheat (
Triticum aestivum
L.), Theor.
Appl. Genet., 108: 261-273
Jones L.E., Rybka K, and Lukaszewski A.J., 2002, The effect of a
deficiency and a deletion on recombination in chromosome 1BL in
wheat, Theor. Appl. Genet., 104: 1204-1208
Jun T.H., Van K, Kim M.Y., Lee H.S., and Walker D.R., 2007, Association
analysis using SSR markers to find QTL for seed protein content in
soybean, Euphytica, 162: 179-191
Jung M., Ching A., Bhattramakki D., Dolan M., Tingey S., Morgante M.,
and Rafalski A., 2004, Linkage disequilibrium and sequence diversity
in a 500-kbp region around the
adh1
locus in elite maize germplasm,
Theor. Appl. Genet., 109: 681-689
Kirigwi F.M., Ginkel M.V., Brown-Gedira G., Gill B.S., Paulsen G.M., and
Fritz A.K., 2007, Markers associated with a QTL for grain yield in
wheat under drought, Mol. Breed., 20: 401-413
Kraakman A.T.W., 2006, Linkage disequilibrium mapping of
morphological, resistance, and other agronomically relevant traits in
modern spring barley cultivars, Mol. Breed., 17: 41-58
Kumar N, Kulwal P.L., Balyan H.S., and Gupta P.K., 2007, QTL mapping
for yield and yield contribution traits in two mapping populations of
bread wheat, Mol. Breed., 19: 163-177
Lander E.S., and Schork N.J., 1994, Genetic dissection of complex traits,
Science, 265: 2037-2048
Leigh F., Lea V., Law J., Wolters P., Powell W., and Donini P., 2003,
Assessment of EST- and genomic microsatellite markers for variety
discrimination and genetic diversity studies in wheat, Euphytica, 133:
359-366
Li W.L., Nelson J.C., Chu C.Y., Shi L.H., Huang S.H., and Liu D.J., 2002,
Chromosomal locations and genetic relationships of tiller and spike
characters in wheat, Euphytica, 125:357-366
Liu, and Muse, 2005, PowerMaker: an integrated analysis environment for
genetic maker analysis, Bioinformatics, 21: 2128-2129
Palaisa K.A., Morgante M., Williams M., and Rafalski A., 2003,
Contrasting effects of selection on sequence diversity and linkage
disequilibrium at two phytoene synthase loci, Plant Cell, 15:
1795-1806
Peng J.H., Bai Y., Haley S.D., and Lapitan N.L.V., 2009,
Microsatellite-based molecular diversity of bread wheat germplasm
and association mapping of wheat resistance to the Russian wheat
aphid, Genetica, 135: 95-122
Pestsova E., Ganal M.W., and Röder M., 2000, Isolation and mapping of
microsatellite markers specific for the D genome of bread wheat,
Genome, 43: 689-697
Pritchard J.K., Stephens M, and Donnelly P, 2000a, Inference of population
structure using multilocus genotype data, Genetics, 155: 945-959
Pritchard J.K., Stephens M, Rosenberg N.A., and Donnelly P, 2000b,
Association mapping in structured populations, Am. J. Hum. Genet., 67:
170-181
Remington D.L., Thornsberry J.M., Matsuola Y, Wilson L.M., Whitt S.R.,
Doebley J, Kresovich S, Goodman M.M., and Buckler E.S., 2001,
Structure of linkage disequilibrium and phenotypic associations in the
maize genome, Proc. Natl. Acad. Sci., USA, 98: 11479-11484.
Rhone B., Raquin A.L., and Goldringer I., 2007, Strong linkage
disequilibrium near the selected Yr17 resistance gene in a wheat
experimental population, Theor. Appl. Genet., 114: 787-802
Röder M., Korzun V., Wendehake K., Plaschke J., Tixier M.H., Leroy P.,
and Ganal M.W., 1998, A microsatellite map of wheat, Genetics, 149:
2007-2023
Somers D.J., Isaac P., and Edwards K., 2004, A high-density microsatellite
consensus map for bread wheat (
Triticum aestivum
L.), Theor. Appl.
Genet., 109: 1105-1114
Somers D.J., Banks T., Depauw R., Stephen F., John C., Pozniak C., and
McCartney C., 2007, Genome-wide linkage disequilibrium analysis in
bread wheat and durum wheat, Genome, 50: 557-567
Stich B., Melchinger A.E., Frisch M, Maurer H.P., Heckenberger M, and
Reif J.C., 2005, Linkage disequilibrium in European elite maize
germplasm investigated with SSRs, Theor. Appl. Genet., 111: 723-730
Tenaillon M.I., Sawkins M.C., Long A.D., Gaut R.L., Doebley J.F., and
Gaut B.S., 2001, Patterns of DNA sequence polymorphism along
chromosome 1 of maize (
Zea mays
ssp.
mays
L.), Genetics, 162:
1401-1413
Thornsberry J.M., Goodman M.M., Doebley J., Kresovich S., Nielsen D.,
and Buckler E.S., 2001,
Dwarf8
polymorphisms associate with
variation in flowering time, Nat. Genet., 28: 286-289
Tommasini L., Schnurbusch T., Fossati D., Mascher F., and Keller B., 2007,
Association mapping of
Stagonospora nodorum
blotch resistance in
modern European winter wheat varieties, Theor. Appl. Genet., 115:
697-708
Weigel D, and Nordborg M., 2005, Natural variation in
Arabidopsis
. How
do we find the causal genes? Plant Physiol., 138: 567-568
Wen W., Mei H.W., Feng F.J., Yu S.B., Huang Z.C., Wu J.H., Chen L, Xu
X.Y., and Luo X.J., 2009, Population structure and association