IJMEB_2025v15n1

International Journal of Molecular Evolution and Biodiversity, 2025, Vol.15, No.1, 10-28 http://ecoevopublisher.com/index.php/ijmeb 28 Pan K.L., 2024, Genetic research on egg production performance in poultry: from the perspective of whole genome association analysis, Animal Molecular Breeding, 14(1): 36-44. https://doi.org/10.5376/amb.2024.14.0005 Peona V., Palacios-Gimenez O.M., Blommaert J., Liu J., Haryoko T., Jønsson K., Irestedt M., Zhou Q., Jern P., and Suh A., 2021, The avian W chromosome is a refugium for endogenous retroviruses with likely effects on female-biased mutational load and genetic incompatibilities, Philosophical Transactions of the Royal Society B: Biological Sciences, 376(1833): 20200186. https://doi.org/10.1098/rstb.2020.0186 Ren X.F., Guan Z., Li H.Y., Wen J.H. Zhao X.R., Wang G., Zhang X.Y., Wang H., Zhang L., Yu F.Q., and Qu L.J., 2023, Extensive intra- and inter-genetic admixture of Chinese gamecock and other indigenous chicken breeds revealed by genomic data, Poultry Science, 102(7): 102766. https://doi.org/10.1016/j.psj.2023.102766 Shi J., Xiong H., Su J., Wang Q., Wang H., Yang C., Hu C., Cui Z., and Liu L., 2024, Multiomics analyses reveal high yield-related genes in the hypothalamic-pituitary-ovarian/liver axis of chicken, Poultry Science, 103(12), 104276. https://doi.org/10.1016/j.psj.2024.104276 Stiller J., Feng S., Chowdhury A.A., Rivas-González I., Duchêne D., Fang Q., Deng Y., Kozlov A., Stamatakis A., Claramunt S., Nguyen J., Ho S., Faircloth B., Haag J., Houde P., Cracraft J., Balaban M., Mai U., Chen G., Gao R., Zhou C., Xie Y., Huang Z., Cao Z., Yan Z., Ogilvie H., Nakhleh L., Lindow B., Morel B., Fjeldså J., Hosner P., Da Fonseca R., Petersen B., Tobias J., Székely T., Kennedy J., Reeve A., Liker A., Stervander M., Antunes A., Tietze D., Bertelsen M., Lei F., Rahbek C., Graves G., Schierup M., Warnow T., Braun E., Gilbert M., Jarvis E., Mirarab S., and Zhang G., 2024, Complexity of avian evolution revealed by family-level genomes, Nature, 629: 851-860. https://doi.org/10.1038/s41586-024-07323-1 Wang K., Hu H., Tian Y., Li J., Scheben A., Zhang C., Li Y., Wu J., Yang L., Fan X., Sun G., Li D., Zhang Y., Han R., Jiang R., Huang H., Yan F., Wang Y., Li Z., Li G., Liu X., Li W., Edwards D., and Kang X., 2021, The chicken pan-genome reveals gene content variation and a promoter region deletion in IGF2BP1 affecting body size, Molecular Biology and Evolution, 38(11): 5066-5081. https://doi.org/10.1093/molbev/msab231 Wang M.S., Zhang J.J., Guo X., Li M., Meyer R.S., Ashari H., Zheng Z., Wang S., Peng M., Jiang Y., Thakur M., Suwannapoom C., Esmailizadeh A., Hirimuthugoda N., Zein M., Kusza S., Kharrati-Koopaee H., Zeng L., Wang Y., Yin T., Yang M., Li M., Lu X., Lasagna E., Ceccobelli S., Gunwardana H., Senasig T., Feng S., Zhang H., Bhuiyan A., Khan M., Silva G., Thuy L., Mwai O., Ibrahim M., Zhang G., Qu K., Hanotte O., Shapiro B., Bosse M., Wu D., Han J., and Zhang Y.P., 2021, Large-scale genomic analysis reveals the genetic cost of chicken domestication, BMC Biology, 19: 1-16. https://doi.org/10.1186/s12915-021-01052-x Wang M.S., Thakur M., Peng M.S., Jiang Y., Frantz L., Li M., Zhang J.J., Wang S., Peters J., Otecko N., Suwannapoom C., Guo X., Zheng Z., Esmailizadeh A., Hirimuthugoda N., Ashari H., Suladari S., Zein M., Kusza S., Sohrabi S., Kharrati-Koopaee H., Shen Q., Zeng L., Yang M., Wu Y., Yang X., Lu X., Jia X., Nie Q., Lamont S., Lasagna E., Ceccobelli S., Gunwardana H., Senasige T., Feng S., Si J., Zhang H., Jin J., Li M., Liu Y., Chen H., Ma C., Dai S., Bhuiyan A., Khan M., Silva G., Le T., Mwai O., Ibrahim M., Supple M., Shapiro B., Hanotte O., Zhang G., Larson G., Han J., Wu D., and Zhang Y.P., 2020, 863 genomes reveal the origin and domestication of chicken, Cell Research, 30(8): 693-701. https://doi.org/10.1038/s41422-020-0349-y Zhang S.P., and Lin X.F., 2024, Whole-genome association analysis in revealing the application of genetic factors affecting livestock production traits, Animal Molecular Breeding, 14(1): 45-53. https://doi.org/10.5376/amb.2024.14.0006 Zhang Z., Qiu M., Du H., Li Q., Yu C., Gan W., Peng H., Xia B., Xiong X., Song X., Yang L., Hu C., Chen J., Yang C., and Jiang X., 2021, Whole genome re-sequencing identifies unique adaption of single nucleotide polymorphism, Insertion/Deletion and structure variation related to hypoxia in Tibetan chickens, Gene Expression Patterns, 119: 119181. https://doi.org/10.1016/j.gep.2021.119181 Zhong H., Kong X., Zhang Y., Su Y., Zhang B., Zhu L., Chen H., Gou X., and Zhang H., 2022, Microevolutionary mechanism of high‐altitude adaptation in Tibetan chicken populations from an elevation gradient, Evolutionary Applications, 15: 2100-2112. https://doi.org/10.1111/eva.13503 Zhou J., Chang Y., Li J., Bao H., and Wu C., 2023, Integrating whole-genome resequencing and RNA sequencing data reveals selective sweeps and differentially expressed genes related to nervous system changes in Luxi gamecocks, Genes, 14(3): 584. https://doi.org/10.3390/genes14030584

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