TGG_2024v15n1

Triticeae Genomics and Genetics, 2024, Vol.15, No.1, 31-43 http://cropscipublisher.com/index.php/lgg 41 Colonna Romano N., and Fanti L., 2022, Transposable elements: major players in shaping genomic and evolutionary patterns, Cells, 11(6): 1048. https://doi.org/10.3390/cells11061048 PMid:35326499 PMCid:PMC8947103 Divashuk M.G., Karlov G.I., and Kroupin P.Y., 2019, Copy number variation of transposable elements in Thinopyrum intermedium and its diploid relative species, Plants, 9(1): 15. https://doi.org/10.3390/plants9010015 PMid:31877707 PMCid:PMC7020174 Drongitis D., Aniello F., Fucci L., and Donizetti A., 2019, Roles of transposable elements in the different layers of gene expression regulation, International Journal of Molecular Sciences, 20(22): 5755. https://doi.org/10.3390/ijms20225755 PMid:31731828 PMCid:PMC6888579 Galbraith J.D., Ludington A.J., Sanders K.L., Suh A., and Adelson D.L., 2021, Horizontal transfer and subsequent explosive expansion of a DNA transposon in sea kraits (Laticauda), Biology Letters, 17(9): 20210342. https://doi.org/10.1098/rsbl.2021.0342 PMid:34464541 PMCid:PMC8437027 Glinsky G.V., 2018, Contribution of transposable elements and distal enhancers to evolution of human-specific features of interphase chromatin architecture in embryonic stem cells, Chromosome Research, 26: 61-84. https://doi.org/10.1007/s10577-018-9571-6 PMid:29335803 Joly-Lopez Z., and Bureau T.E., 2018, Exaptation of transposable element coding sequences, Current Opinion in Genetics and Development, 49: 34-42. https://doi.org/10.1016/j.gde.2018.02.011 PMid:29525543 Ibrahim M.A., Al-Shomrani B.M., Alharbi S.N., Elliott T.A., Alsuabeyl M.S., Alqahtani F.H., and Manee M.M., 2021, Genome-wide comparative analysis of transposable elements in Palmae genomes, Frontiers in Bioscience-Landmark, 26(11): 1119-1131. https://doi.org/10.52586/5014 PMid:34856758 Keidar-Friedman D., Bariah I., and Kashkush K., 2018, Genome-wide analyses of miniature inverted-repeat transposable elements reveals new insights into the evolution of the Triticum-Aegilops group, PLoS One, 13(10): e0204972. https://doi.org/10.1371/journal.pone.0204972 PMid:30356268 PMCid:PMC6200218 Klein S.J., and O’Neill R.J., 2018, Transposable elements: genome innovation, chromosome diversity, and centromere conflict, Chromosome Research, 26: 5-23. https://doi.org/10.1007/s10577-017-9569-5 PMid:29332159 PMCid:PMC5857280 Lanciano S., and Cristofari G., 2020, Measuring and interpreting transposable element expression, Nature Reviews Genetics, 21(12): 721-736. https://doi.org/10.1038/s41576-020-0251-y PMid:32576954 Lima-Mendez G., Oliveira Alvarenga D., Ross K., Hallet B., Van Melderen L., Varani A.M., and Chandler M., 2020, Toxin-antitoxin gene pairs found in Tn 3 family transposons appear to be an integral part of the transposition module, MBio, 11(2): 1110-1128. https://doi.org/10.1128/mBio.00452-20 PMid:32234815 PMCid:PMC7157771 Li W., Zhang P., Fellers J.P., Friebe B., and Gill B.S., 2004, Sequence composition, organization, and evolution of the core Triticeae genome, The Plant Journal, 40(4): 500-511. https://doi.org/10.1111/j.1365-313X.2004.02228.x PMid:15500466 Lorrain C., Feurtey A., Möller M., Haueisen J., and Stukenbrock E., 2021, Dynamics of transposable elements in recently diverged fungal pathogens: lineage-specific transposable element content and efficiency of genome defenses, G3, 11(4): jkab068. https://doi.org/10.1093/g3journal/jkab068 PMid:33724368 PMCid:PMC8759822 Marasca F., Gasparotto E., Polimeni B., Vadalà R., Ranzani V., and Bodega B., 2020, The sophisticated transcriptional response governed by transposable elements in human health and disease, International Journal of Molecular Sciences, 21(9): 3201. https://doi.org/10.3390/ijms21093201 PMid:32366056 PMCid:PMC7247572 Markova D.N., and Mason-Gamer R.J., 2015, The role of vertical and horizontal transfer in the evolutionary dynamics of PIF-like transposable elements in Triticeae, PLoS One, 10(9): e0137648. https://doi.org/10.1371/journal.pone.0137648 PMid:26355747 PMCid:PMC4565680

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