Rice Genomics and Genetics 2025, Vol.16, No.2, 96-105 http://cropscipublisher.com/index.php/rgg 104 McNally K., Childs K., Bohnert R., Davidson R., Zhao K., Ulat V., Zeller G., Clark R., Hoen D., Bureau T., Stokowski R., Ballinger D., Frazer K., Cox D., Padhukasahasram B., Bustamante C., Weigel D., Mackill D., Bruskiewich R., Rätsch G., Buell C., Leung H., and Leach J., 2009, Genomewide SNP variation reveals relationships among landraces and modern varieties of rice, Proceedings of the National Academy of Sciences, 106: 12273-12278. https://doi.org/10.1073/pnas.0900992106 Molina J., Sikora M., Garud N., Flowers J., Rubinstein S., Reynolds A., Huang P., Jackson S., Schaal B., Bustamante C., Boyko A., and Purugganan M., 2011, Molecular evidence for a single evolutionary origin of domesticated rice, Proceedings of the National Academy of Sciences, 108: 8351-8356. https://doi.org/10.1073/pnas.1104686108 Moner A., Furtado A., Chivers I., Fox G., Crayn D., and Henry R., 2018, Diversity and evolution of rice progenitors in Australia, Ecology and Evolution, 8: 4360-4366. https://doi.org/10.1002/ece3.3989 Nabholz B., Sarah G., Sabot F., Ruiz M., Adam H., Nidelet S., Ghesquière A., Santoni S., David J., and Glémin S., 2014, Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima), Molecular Ecology, 23(9): 2210-2227. https://doi.org/10.1111/mec.12738 Qiu J., Zhou Y., Mao L., Ye C., Wang W., Zhang J., Yu Y., Fu F., Wang Y., Qian F., Qi T., Wu S., Sultana M., Cao Y., Wang Y., Timko M., Ge S., Fan L., and Lu Y., 2017, Genomic variation associated with local adaptation of weedy rice during de-domestication, Nature Communications, 8: 15323. https://doi.org/10.1038/ncomms15323 Ray A., Deb D., Ray R., and Chattopadhayay B., 2013, Phenotypic characters of rice landraces reveal independent lineages of short-grain aromatic indica rice, AoB Plants, 5: plt032. https://doi.org/10.1093/aobpla/plt032 Sang T., and Ge S., 2007a, Genetics and phylogenetics of rice domestication, Current Opinion in Genetics & Development, 17(6): 533-538. https://doi.org/10.1016/J.GDE.2007.09.005 Sang T., and Ge S., 2007b, The puzzle of rice domestication, Journal of Integrative Plant Biology, 49: 760-768. https://doi.org/10.1111/J.1744-7909.2007.00510.X Shomura A., Izawa T., Ebana K., Ebitani T., Kanegae H., Konishi S., and Yano M., 2008, Deletion in a gene associated with grain size increased yields during rice domestication, Nature Genetics, 40: 1023-1028. https://doi.org/10.1038/ng.169 Singh N., Singh B., Rai V., Sidhu S., Singh A., and Singh N., 2017, Evolutionary insights based on SNP haplotypes of red pericarp, grain size and starch synthase genes in wild and cultivated rice, Frontiers in Plant Science, 8: 972. https://doi.org/10.3389/fpls.2017.00972 Stein J., Yu Y., Copetti D., Zwickl D., Zhang L., Zhang C., Chougule K., Gao D., Iwata A., Goicoechea J., Wei S., Wang J., Liao Y., Wang M., Jacquemin J., Becker C., Kudrna D., Zhang J., Londono C., Song X., Lee S., Sanchez P., Zuccolo A., Ammiraju J., Talag J., Danowitz A., Rivera L., Gschwend A., Noutsos C., Wu C., Kao S., Zeng J., Wei F., Zhao Q., Feng Q., Baidouri M., Carpentier M., Lasserre E., Cooke R., Farias D., Maia L., Santos R., Nyberg K., McNally K., Mauleon R., Alexandrov N., Schmutz J., Flowers D., Fan C., Weigel D., Jena K., Wicker T., Chen M., Han B., Henry R., Hsing Y., Kurata N., Oliveira A., Panaud O., Jackson S., Machado C., Sanderson M., Long M., Ware D., and Wing R., 2018, Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza, Nature Genetics, 50: 285-296. https://doi.org/10.1038/s41588-018-0040-0 Sweeney M., and McCouch S., 2007, The complex history of the domestication of rice, Annals of Botany, 100: 951-957. https://doi.org/10.1093/aob/mcm128 Tong W., He Q., and Park Y., 2017, Genetic variation architecture of mitochondrial genome reveals the differentiation in Korean landrace and weedy rice, Scientific Reports, 7: 43327. https://doi.org/10.1038/srep43327 Vaughan D., Lu B., and Tomooka N., 2008, The evolving story of rice evolution, Plant Science, 174: 394-408. https://doi.org/10.1016/J.PLANTSCI.2008.01.016 Veltman M., Flowers J., Flowers J., Andel T., Andel T., and Schranz M., 2018, Origins and geographic diversification of African rice (Oryza glaberrima), PLoS One, 14(3): e0203508. https://doi.org/10.1371/journal.pone.0203508 Wambugu P., Brozynska M., Furtado A., Waters D., and Henry R., 2015, Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences, Scientific Reports, 5: 13957. https://doi.org/10.1038/srep13957 Wei X., and Huang X., 2019, Origin, taxonomy, and phylogenetics of rice, In: Bao J. (ed.), Rice, chemistry and technology, Woodhead Publishing and AACC International Press, Amsterdam, The Netherlands, pp.1-29. https://doi.org/10.1016/B978-0-12-811508-4.00001-0 Yang C., Kawahara Y., Mizuno H., Wu J., Matsumoto T., and Itoh T., 2012, Independent domestication of Asian rice followed by gene flow fromjaponica to indica, Molecular Biology and Evolution, 29(5): 1471-1479. https://doi.org/10.1093/molbev/msr315 Zhang L., Zhu Q., Wu Z., Ross-Ibarra J., Gaut B., Ge S., and Sang T., 2009, Selection on grain shattering genes and rates of rice domestication, The New Phytologist, 184(3): 708-720. https://doi.org/10.1111/j.1469-8137.2009.02984.x
RkJQdWJsaXNoZXIy MjQ4ODYzNA==