MGG_2024v15n3

Maize Genomics and Genetics 2024, Vol.15, No.3, 123-135 http://cropscipublisher.com/index.php/mgg 135 Stitzer M., Anderson S., Springer N., and Ross-Ibarra J., 2019, The genomic ecosystem of transposable elements in maize, PLoS Genetics, 17(10): e1009768. https://doi.org/10.1101/559922. Su W., Gu X., and Peterson T., 2019, TIR-Learner, a new ensemble method for TIR transposable element annotation, provides evidence for abundant new transposable elements in the maize genome, Molecular Plant, 12(3): 447-460. https://doi.org/10.1016/j.molp.2019.02.008 PMid:30802553 Sundaram V., and Wysocka J., 2020, Transposable elements as a potent source of diverse cis-regulatory sequences in mammalian genomes, Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1795): 20190347. https://doi.org/10.1098/rstb.2019.0347 PMid:32075564 PMCid:PMC7061989 Sundaram V., Cheng Y., Ma Z., Li D., Xing X., Edge P., Snyder M., and Wang T., 2014, Widespread contribution of transposable elements to the innovation of gene regulatory networks, Genome Research, 24: 1963-1976. https://doi.org/10.1101/gr.168872.113 PMid:25319995 PMCid:PMC4248313 Vicient C., and Casacuberta J., 2017, Impact of transposable elements on polyploid plant genomes, Annals of Botany, 120(2): 195-207. https://doi.org/10.1093/aob/mcx078. PMid:28854566 PMCid:PMC5737689 Wang D., Zhang J., Zuo T., Zhao M., Lisch D., and Peterson T., 2020, Small RNA-mediated de novo silencing of Ac/Ds transposons is initiated by alternative transposition in maize, Genetics, 215(2): 393-406. https://doi.org/10.1534/genetics.120.303264 PMid:32317287 PMCid:PMC7268987 Warren I., Naville M., Chalopin D., Levin P., Berger C., Galiana D., and Volff J., 2015, Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates, Chromosome Research, 23: 505-531. https://doi.org/10.1007/s10577-015-9493-5 PMid:26395902 Wei K., Mai D., Chatla K., and Bachtrog D., 2022, Dynamics and impacts of transposable element proliferation in the drosophila nasuta species group radiation, Molecular Biology and Evolution, 39(5): msac080. https://doi.org/10.1093/molbev/msac080 PMid:35485457 PMCid:PMC9075770 Wells J., and Feschotte C., 2020, A field guide to eukaryotic transposable elements, Annual Review of Genetics, 54(1): 539-561. https://doi.org/10.1146/annurev-genet-040620-022145 PMid:32955944 PMCid:PMC8293684 Zhao H., Zhang W., Chen L., Wang L., Marand A., Wu Y., and Jiang J., 2018, Proliferation of regulatory DNA elements derived from transposable elements in the maize genome, Plant Physiology, 176(4): 2789-2803. https://doi.org/10.1104/pp.17.01467 PMid:29463772 PMCid:PMC5884613

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