MGG_2024v15n3

Maize Genomics and Genetics 2024, Vol.15, No.3, 123-135 http://cropscipublisher.com/index.php/mgg 133 Conflict of Interest Disclosure The author affirms that this research was conducted without any commercial or financial relationships that could be construed as a potential conflict of interest. References Ali A., Han K., and Liang P., 2020, Role of transposable elements in gene regulation in the human genome, Life, 11(2): 118. https://doi.org/10.3390/life11020118 PMid:33557056 PMCid:PMC7913837 Bennetzen, J., and Wang, H., 2014, The contributions of transposable elements to the structure, function, and evolution of plant genomes, Annual Review of Plant biology, 65: 505-530. https://doi.org/10.1146/annurev-arplant-050213-035811 PMid:24579996 Benoit M., 2020, In the transcripts: long-read transcriptomics enables a novel type of transposable element annotation in plants, The Plant Cell, 32(9): 2661-2662. https://doi.org/10.1105/tpc.20.00523 PMid:32665309 PMCid:PMC7474303 Bhat A., Ghatage T., Bhan S., Lahane G., Dhar A., Kumar R., Pandita R., Bhat K.M., Ramos K.S., and Pandita T., 2022, Role of transposable elements in genome stability: implications for health and disease, International Journal of Molecular Sciences, 23(14): 7802. https://doi.org/10.3390/ijms23147802 Blumenstiel J., 2011, Evolutionary dynamics of transposable elements in a small RNA world, Trends in Genetics, 27(1): 23-31. https://doi.org/10.1016/j.tig.2010.10.003. Bonchev G., and Willi Y., 2018, Accumulation of transposable elements in selfing populations of Arabidopsis lyrata supports the ectopic recombination model of transposon evolution, The New Phytologist, 219(2): 767-778. https://doi.org/10.1111/nph.15201 PMid:29757461 Castanera R., López-Varas L., Borgognone A., LaButti K., Lapidus A., Schmutz J., Grimwood J., Pérez G., Pisabarro A., Grigoriev I., Stajich J., and Ramírez L., 2016, Transposable elements versus the fungal genome: impact on whole-genome architecture and transcriptional profiles, PLoS Genetics, 12(6): e1006108. https://doi.org/10.1371/journal.pgen.1006108 PMid:27294409 PMCid:PMC4905642 Chalopin D., Naville M., Plard F., Galiana D., and Volff J., 2015, Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates, Genome Biology and Evolution, 7: 567-580. https://doi.org/10.1093/gbe/evv005 PMid:25577199 PMCid:PMC4350176 Chénais B., Caruso A., Hiard S., and Casse N., 2012, The impact of transposable elements on eukaryotic genomes: from genome size increase to genetic adaptation to stressful environments, Gene, 509(1): 7-15. https://doi.org/10.1016/j.gene.2012.07.042 PMid:22921893 Chuong, E., Elde, N., and Feschotte, C., 2016, Regulatory activities of transposable elements: from conflicts to benefits, Nature Reviews Genetics, 18: 71-86. https://doi.org/10.1038/nrg.2016.139. PMid:27867194 PMCid:PMC5498291 Drongitis D., Aniello F., Fucci L., and Donizetti A., 2019, Roles of transposable elements in the different layers of gene expression regulation, International Journal of Molecular Sciences, 20(22): 5755. https://doi.org/10.3390/ijms20225755 PMid:31731828 PMCid:PMC6888579 Etchegaray E., Naville M., Volff J., and Haftek-Terreau Z., 2021, Transposable element-derived sequences in vertebrate development, Mobile DNA, 12: 1-24. https://doi.org/10.1186/s13100-020-00229-5. Fedoroff N., 2012, Transposable elements, epigenetics, and genome evolution, Science, 338: 758-767. https://doi.org/10.1126/science.338.6108.758 PMid:23145453 Friedli M., and Trono D., 2015, The developmental control of transposable elements and the evolution of higher species, Annual Review of Cell and Developmental Biology, 31: 429-451. https://doi.org/10.1146/annurev-cellbio-100814-125514 PMid:26393776 Gill R., Scossa F., King G., Golicz A., Tong C., Snowdon R., Fernie A., and Liu S., 2021, On the role of transposable elements in the regulation of gene expression and subgenomic interactions in crop genomes, Critical Reviews in Plant Sciences, 40: 157-189. https://doi.org/10.1080/07352689.2021.1920731

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