LGG_2024v15n4

Legume Genomics and Genetics 2024, Vol.15, No.4, 187-198 http://cropscipublisher.com/index.php/lgg 197 Koenen E., Ojeda D., Bakker F., Wieringa J., Kidner C., Hardy O., Pennington R., Herendeen P., Bruneau A., and Hughes C., 2020, The origin of the legumes is a complex paleopolyploid phylogenomic tangle closely associated with the cretaceous-paleogene (K-Pg) mass extinction event, Systematic Biology, 70: 508-526. https://doi.org/10.1093/sysbio/syaa041 Koenen E., Ojeda D., Steeves R., Migliore J., Bakker F., Wieringa J., Kidner C., Hardy O., Pennington R., Bruneau A., and Hughes C., 2019, Large‐scale genomic sequence data resolve the deepest divergences in the legume phylogeny and support a near‐simultaneous evolutionary origin of all six subfamilies, The New Phytologist, 225: 1355-1369. https://doi.org/10.1111/nph.16290 Kreplak J., Madoui M., Cápal P., Novák P., Labadie K., Aubert G., Bayer P., Gali K., Syme R., Main D., Klein A., Bérard A., Vrbová I., Fournier C., d’Agata L., Belser C., Berrabah W., Toegelová H., Milec Z., Vrána J., Lee H., Kougbeadjo A., Térézol M., Huneau C., Turo C., Mohellibi N., Neumann P., Falque M., Gallardo K., McGee R., Tar’an B., Bendahmane A., Aury J., Batley J., Paslier M., Ellis N., Warkentin T., Coyne C., Salse J., Edwards D., Lichtenzveig J., Macas J., Doležel J., Wincker P., and Burstin J., 2019, A reference genome for pea provides insight into legume genome evolution, Nature Genetics, 51: 1411-1422. https://doi.org/10.1038/s41588-019-0480-1 Kumar J., Srivastava E., Singh M., and Pratap A., 2014, Genomics in studying the legume genome evolution, In: Gupta S., Nadarajan, N., and Gupta D. (eds), Legumes in the omic era, Springer, New York, USA, pp.287-300. https://doi.org/10.1007/978-1-4614-8370-0_14 Liber M., Duarte I., Maia A., and Oliveira H., 2021, The history of lentil (Lens culinaris subsp. culinaris) domestication and spread as revealed by genotyping-by-sequencing of wild and landrace accessions, Frontiers in Plant Science, 12: 628439. https://doi.org/10.3389/fpls.2021.628439 Lioi L., Zuluaga D., Pavan S., and Sonnante G., 2019, Genotyping-by-sequencing reveals molecular genetic diversity in Italian common bean landraces, Diversity, 11(9): 154. https://doi.org/10.3390/d11090154 Mamidi S., Rossi M., Annam D., Moghaddam S., Lee R., Papa R., and McClean P., 2011, Investigation of the domestication of common bean (Phaseolus vulgaris) using multilocus sequence data, Functional Plant Biology, 38(12): 953-967. https://doi.org/10.1071/FP11124 Nanni L., Bitocchi E., Bellucci E., Rossi M., Rau D., Attene G., Gepts P., and Papa R., 2011, Nucleotide diversity of a genomic sequence similar to SHATTERPROOF(PvSHP1) in domesticated and wild common bean (Phaseolus vulgaris L.), Theoretical and Applied Genetics, 123: 1341-1357. https://doi.org/10.1007/s00122-011-1671-z O’Rourke J., Bolon Y., Bucciarelli B., and Vance C., 2014, Legume genomics: understanding biology through DNA and RNA sequencing, Annals of Botany, 113(7): 1107-1120. https://doi.org/10.1093/aob/mcu072 Pavan S., Delvento C., Nazzicari N., Ferrari B., D’Agostino N., Taranto F., Lotti C., Ricciardi L., and Annicchiarico P., 2022, Merging genotyping-by-sequencing data from two ex situ collections provides insights on the pea evolutionary history, Horticulture Research, 9: uhab062. https://doi.org/10.1093/hr/uhab062 Pfeil B., Schlueter J., Shoemaker R., and Doyle J., 2005, Placing paleopolyploidy in relation to taxon divergence: a phylogenetic analysis in legumes using 39 gene families, Systematic Biology, 54(3): 441-454. https://doi.org/10.1080/10635150590945359 Pratap A., Das A., Kumar S., and Gupta S., 2021, Current perspectives on introgression breeding in food legumes, Frontiers in Plant Science, 11: 589189. https://doi.org/10.3389/fpls.2020.589189 Prudent M., Dequiedt S., Sorin C., Girodet S., Nowak V., Duc G., Salon C., and Maron P., 2019, The diversity of soil microbial communities matters when legumes face drought, Plant, Cell and Environment, 43(4): 1023-1035. https://doi.org/10.1111/pce.13712 Queiroz L., Pastore J., Cardoso D., Snak C., Lima A., Gagnon E., Vatanparast M., Holland A., and Egan A., 2015, A multilocus phylogenetic analysis reveals the monophyly of a recircumscribed papilionoid legume tribe Diocleae with well-supported generic relationships, Molecular Phylogenetics and Evolution, 90: 1-19. https://doi.org/10.1016/j.ympev.2015.04.016 Raatz B., Mukankusi C., Lobaton J., Male A., Chisale V., Amsalu B., Fourie D., Mukamuhirwa F., Muimui K., Mutari B., Nchimbi-Msolla S., Nkalubo S., Tumsa K., Chirwa R., Maredia M., and He C., 2019, Analyses of African common bean (Phaseolus vulgaris L.) germplasm using a SNP fingerprinting platform: diversity, quality control and molecular breeding, Genetic Resources and Crop Evolution, 66: 707-722. https://doi.org/10.1007/s10722-019-00746-0 Raina A., Khan S., Wani M.R., Laskar R.A., and Mushtaq W., 2019, Chickpea (Cicer arietinumL.) cytogenetics, genetic diversity and breeding, Advances in Plant Breeding Strategies: Legumes, 7: 53-112. https://doi.org/10.37118/ijdr.26892.06.2023 Ren L., Huang W., and Cannon S., 2019, Reconstruction of ancestral genome reveals chromosome evolution history for selected legume species, The New Phytologist, 223(4): 2090-2103. https://doi.org/10.1111/nph.15770

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