Legume Genomics and Genetics 2024, Vol.15, No.1, 27-36 http://cropscipublisher.com/index.php/lgg 29 single-molecule real-time (SMRT) sequencing provides long-read data, which is particularly useful for resolving complex genomic regions and studying polyploid species (Rothfels et al., 2017; Lyu et al., 2021). Figure 1 Phylogeny of legumes based on Bayesian analyses of 72 protein-coding chloroplast genes under the CATGTR model in Phylobayes (Adopted from Koenen et al., 2019) Image caption: a: Majority-rule consensus tree of the amino acid alignment, displaying only the Fabales portion, with outgroup taxa removed; b: Complete tree including outgroup taxa; c: Simplified tree showing support for subfamily relationships using different inference methods (ML: Maximum Likelihood; BI: Bayesian Inference) and sequence types (aa: Amino acids; nt: Nucleotides); Majority-rule consensus trees for both the amino acid and nucleotide alignments, with tip labels for all taxa and support values indicated. In panels a and b, colored circles indicate node support in posterior probabilities (PP) (Adapted from Koenen et al., 2019)
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