CGG_2025v16n5

Cotton Genomics and Genetics 2025, Vol.16, No.5, 210-221 http://cropscipublisher.com/index.php/cgg 221 Wang M., Tu L., Lin M., Lin Z., Wang P., Yang Q., Ye Z., Shen C., Li J., Zhang L., Zhou X., Nie X., Li Z., Guo K., Huang C., Jin S., Zhu L., Yang X., Min L., Yuan D., Zhang Q., Lindsey K., and Zhang X., 2017, Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication, Nature Genetics, 49(4): 579-587. https://doi.org/10.1038/ng.3807 Wen X., Chen Z., Yang Z., Wang M., Jin S., Wang G., Zhang L., Wang L., Li J., Saeed S., He S., Wang Z., Wang K., Kong Z., Li F., Zhang X., Chen X., and Zhu Y., 2023, A comprehensive overview of cotton genomics, biotechnology and molecular biological studies, Science China Life Sciences, 66(10): 2214-2256. https://doi.org/10.1007/s11427-022-2278-0 Xing A., Zhang X., Wang J., He S., Nazir M., Wang X., Wang X., Yang R., Zhang H., Fu G., Chen B., Peng Z., and Du X., 2024, Transgressive and subgenome expression level dominance and co-expression network analyses at the early fiber development in allopolyploid Gossypium, Industrial Crops and Products, 214: 118552. https://doi.org/10.1016/j.indcrop.2024.118552 Yang L., Qin W., Wei X., Liu R., Yang J., Wang Z., Yan Q., Zhang Y., Hu W., Han X., Gao C., Zhan J., Gao B., Ge X., Li F., and Yang Z., 2024, Regulatory networks of coresident subgenomes during rapid fiber cell elongation in upland cotton, Plant Communications, 5(12): 101130. https://doi.org/10.1016/j.xplc.2024.101130 Yang Z., Ge X., Yang Z., Qin W., Sun G., Wang Z., Li Z., Liu J., Wu J., Wang Y., Lu L., Wang P., Mo H., Zhang X., and Li F., 2019, Extensive intraspecific gene order and gene structural variations in upland cotton cultivars, Nature Communications, 10(1): 2989. https://doi.org/10.1038/s41467-019-10820-x You J., Liu Z., Qi Z., Ma Y., Sun M., Su L., Niu H., Peng Y., Luo X., Zhu M., Huang Y., Chang X., Hu X., Zhang Y., Pi R., Liu Y., Meng Q., Li J., Zhang Q., Zhu L., Lin Z., Min L., Yuan D., Grover C., Fang D., Lindsey K., Wendel J., Tu L., Zhang X., and Wang M., 2023, Regulatory controls of duplicated gene expression during fiber development in allotetraploid cotton, Nature Genetics, 55(11): 1987-1997. https://doi.org/10.1038/s41588-023-01530-8 Zhang A., Wei Y., Shi Y., Deng X., Gao J., Feng Y., Zheng D., Cheng X., Li Z., Wang T., Wang K., Liu F., Peng R., and Zhang W., 2021, Profiling of H3K4me3 and H3K27me3 and their roles in gene subfunctionalization in allotetraploid cotton, Frontiers in Plant Science, 12: 761059. https://doi.org/10.3389/fpls.2021.761059 Zhang T., Hu Y., Jiang W., Fang L., Guan X., Chen J., Zhang J., Saski C., Scheffler B., Stelly D., Hulse-Kemp A., Wan Q., Liu B., Liu C., Wang S., Pan M., Wang Y., Wang D., Ye W., Chang L., Zhang W., Song Q., Kirkbride R., Chen X., Dennis E., Llewellyn D., Peterson D., Thaxton P., Jones D., Wang Q., Xu X., Zhang H., Wu H., Zhou L., Mei G., Chen S., Tian Y., Xiang D., Li X., Ding J., Zuo Q., Tao L., Liu Y., Li J., Lin Y., Hui Y., Cao Z., Cai C., Zhu X., Jiang Z., Zhou B., Guo W., Li R., and Chen Z., 2015, Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement, Nature Biotechnology, 33(5): 531-537. https://doi.org/10.1038/nbt.3207 Zhao B., Cao J., Hu G., Chen Z., Wang L., Shangguan X., Wang L., Mao Y., Zhang T., Wendel J., and Chen X., 2018, Core cis-element variation confers subgenome-biased expression of a transcription factor that functions in cotton fiber elongation, New Phytologist, 218(3): 1061-1075. https://doi.org/10.1111/nph.15063

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