CGG2025v16n3

Cotton Genomics and Genetics 2025, Vol.16, No.3, 107-116 http://cropscipublisher.com/index.php/cgg 116 Yang Z., Gao C., Zhang Y., Yan Q., Hu W., Yang L., Wang Z., and Li F., 2022, Recent progression and future perspectives in cotton genomic breeding, Journal of Integrative Plant Biology, 65(2): 548-569. https://doi.org/10.1111/jipb.13388 You J., Liu Z., Qi Z., Ma Y., Sun M., Su L., Niu H., Peng Y., Luo X., Zhu M., Huang Y., Chang X., Hu X., Zhang Y., Pi R., Liu Y., Meng Q., Li J., Zhang, Q., Zhu L., Lin Z., Min L., Yuan D., Grover C., Fang D., Lindsey K., Wendel J., Tu L., Zhang X., and Wang M., 2023, Regulatory controls of duplicated gene expression during fiber development in allotetraploid cotton, Nature Genetics, 55(11): 1987-1997. https://doi.org/10.1038/s41588-023-01530-8 You Q., Zhang L., Yi X., Zhang K., Yao D., Zhang X., Wang Q., Zhao X., Ling Y., Xu W., Li F., and Su Z., 2016, Co-expression network analyses identify functional modules associated with development and stress response in Gossypium arboreum, Scientific Reports, 6(1): 38436. https://doi.org/10.1038/srep38436 Zhang D., Deng Y., Kukanja P., Agirre E., Bartošovič M., Dong M., Ma C., Ma S., Su G., Bao S., Liu Y., Xiao Y., Rosoklija G., Dwork A., Mann J., Leong K., Boldrini M., Wang L., Haeussler M., Raphael B., Kluger Y., Castelo-Branco G., and Fan R., 2023, Spatial epigenome-transcriptome co-profiling of mammalian tissues, Nature, 616(7955): 113-122. https://doi.org/10.1038/s41586-023-05795-1 Zhang J., Chen R., Dai F., Tian Y., Shi Y., He Y., Hu Y., and Zhang T., 2025, Spatial transcriptome and single-cell RNA sequencing reveal the molecular basis of cotton fiber initiation development, The Plant Journal, 121(6): e70064. https://doi.org/10.1111/tpj.70064 Zhang J., Mei H., Lu H., Chen R., Hu Y., and Zhang T., 2022, Transcriptome time-course analysis in the whole period of cotton fiber development, Frontiers in Plant Science, 13: 864529. https://doi.org/10.3389/fpls.2022.864529 Zhao T., Guan X., Hu Y., Zhang Z., Yang H., Shi X., Han J., Mei H., Wang L., Shao L., Wu H., Chen Q., Zhao Y., Pan J., Hao Y., Dong Z., Long X., Deng Q., Zhao S., Zhang M., Zhu Y., Ma X., Chen Z., Deng Y., Si Z., Li X., Zhang T., Gu F., Gu X., and Fang L., 2024, Population-wide DNA methylation polymorphisms at single-nucleotide resolution in 207 cotton accessions reveal epigenomic contributions to complex traits, Cell Research, 34(12): 859-872. https://doi.org/10.1038/s41422-024-01027-x Zhu S.J., and Luo M.T., 2024, Resistance management in cotton: addressing bt cotton efficacy, Field Crop, 7(5): 270-277. https://doi.org/10.5376/fc.2024.07.0027 Zou C., Wang Q., Lu C., Yang W., Zhang Y., Cheng H., Feng X., Prosper M., and Song G., 2016, Transcriptome analysis reveals long noncoding RNAs involved in fiber development in cotton (Gossypium arboreum), Science China Life Sciences, 59(2): 164-171. https://doi.org/10.1007/s11427-016-5000-2 Zou X., Liu A., Zhang Z., Ge Q., Fan S., Gong W., Li J., Gong J., Shi, Y., Tian B., Wang Y., Liu R., Lei K., Zhang Q., Jiang X., Feng Y., Zhang S., Jia T., Zhang L., Yuan Y., and Shang H., 2019, Co-expression network analysis and hub gene selection for high-quality fiber in upland cotton (Gossypium hirsutum) using RNA sequencing analysis, Genes, 10(2): 119. https://doi.org/10.3390/genes10020119

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