CGG2025v16n3

Cotton Genomics and Genetics 2025, Vol.16, No.3, 107-116 http://cropscipublisher.com/index.php/cgg 115 Liu Z., Fan L., Shu S., Qanmber G., Chen E., Huang J., Li F., and Yang Z., 2024, Cotton metabolism regulatory network: unraveling key genes and pathways in fiber development and growth regulation, Plant Communications, 6(3): 101221. https://doi.org/10.1016/j.xplc.2024.101221 Ma J., Yang L., Dang Y., Shahzad K., Song J., Jia B., Wang L., Feng J., Wang N., Pei W., Wu M., Zhang X., Zhang J., Wu J., and Yu J., 2024, Deciphering the dynamic expression network of fiber elongation and the functional role of the GhTUB5 gene for fiber length in cotton based on an introgression population of upland cotton, Journal of Advanced Research, 73: 1-14. https://doi.org/10.1016/j.jare.2024.08.004 Marconett C., Zhou B., Rieger M., Selamat S., Dubourd M., Fang X., Lynch S., Stueve T., Siegmund K., Berman B., Borok Z., and Laird-Offringa I., 2013, Integrated transcriptomic and epigenomic analysis of primary human lung epithelial cell differentiation, PLoS Genetics, 9(6): e1003513. https://doi.org/10.1371/journal.pgen.1003513 Naoumkina M., and Kim H., 2023, Bridging Molecular genetics and genomics for cotton fiber quality improvement, Crop Science, 63(4): 1794-1815. https://doi.org/10.1002/csc2.20987 Prasad P., Khatoon U., Verma R., Aalam S., Kumar A., Mohapatra D., Bhattacharya P., Bag S., and Sawant S., 2022, Transcriptional landscape of cotton fiber development and its alliance with fiber-associated traits, Frontiers in Plant Science, 13: 811655. https://doi.org/10.3389/fpls.2022.811655 Ruprecht N., Kennedy J., Bansal B., Singhal S., Sens D., Maggio A., Doe V., Hawkins D., Campbel R., O'Connell K., Gill J., Schaefer K., and Singhal S., 2024, Transcriptomics and epigenetic data integration learning module on Google Cloud, Briefings in Bioinformatics, 25(Supplement_1): bbae352. https://doi.org/10.1093/bib/bbae352 Sun X., Qin A., Wang X., Ge X., Liu Z., Guo C., Yu X., Zhang X., Lu Y., Yang J., He J., Zhou Y., Liu Y., Hu M., Liu H., Zhao Z., Hu G., Li W., Zang X., Dai S., Sun S., Yong-Villalobos L., Herrera-Estrella L., Tran L., and Ma X., 2025, Spatiotemporal transcriptome and metabolome landscapes of cotton fiber during initiation and early development, Nature Communications, 16(1): 858. https://doi.org/10.1038/s41467-025-55869-z Tuttle J., Nah G., Duke M., Alexander D., Guan X., Song Q., Chen Z., Scheffler B., and Haigler C., 2015, Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation, BMC Genomics, 16(1): 477. https://doi.org/10.1186/s12864-015-1708-9 Wan Q., Guan X., Yang N., Wu H., Pan M., Liu B., Fang L., Yang S., Hu Y., Ye W., Zhang H., Ma P., Chen J., Wang Q., Mei G., Cai C., Yang D., Wang J., Guo W., Zhang W., Chen X., and Zhang T., 2016, Small interfering RNAs from bidirectional transcripts of GhMML3_A12 regulate cotton fiber development, New Phytologist, 210(4): 1298-1310. https://doi.org/10.1111/nph.13860 Wang D., Hu X., Ye, H., Wang Y., Yang Q., Liang X., Wang Z., Zhou Y., Wen M., Yuan X., Zheng X., Ye W., Guo B., Yusuyin M., Russinova E., Zhou Y., and Wang K., 2023, Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton, Genome Biology, 24(1): 49. https://doi.org/10.1186/s13059-023-02886-0 Wang J., Wang X., Wang L., Nazir M., Fu G., Peng Z., Chen B., Xing A., Zhu M., Ma X., Wang X., Jia Y., Pan Z., Wang L., Xia Y., He S., and Du X., 2024, Exploring the regulatory role of non-coding RNAs in fiber development and direct regulation of GhKCR2 in the fatty acid metabolic pathway in upland cotton, International Journal of Biological Macromolecules, 266: 131345. https://doi.org/10.1016/j.ijbiomac.2024.131345 Wang L., Wang G., Long L., Altunok S., Feng Z., Wang D., Khawar K., and Mujtaba M., 2020, Understanding the role of phytohormones in cotton fiber development through omic approaches; recent advances and future directions, International Journal of Biological Macromolecules, 163: 1301-1313. https://doi.org/10.1016/j.ijbiomac.2020.07.104 Wang M., Wang P., Tu L., Zhu S., Zhang L., Li Z., Zhang Q., Yuan D., and Zhang X., 2016, Multi-omics maps of cotton fibre reveal epigenetic basis for staged single-cell differentiation, Nucleic Acids Research, 44(9): 4067-4079. https://doi.org/10.1093/nar/gkw238 Wen X., Chen Z., Yang Z., Wang M., Jin S., Wang G., Zhang L., Wang L., Li J., Saeed S., He S., Wang Z., Wang K., Kong Z., Li F., Zhang X., Chen X., and Zhu Y., 2023, A comprehensive overview of cotton genomics, biotechnology and molecular biological studies, Science China Life Sciences, 66(10): 2214-2256. https://doi.org/10.1007/s11427-022-2278-0 Xiao X., Liu R., Gong J., Li P., Li Z., Gong W., Liu A., Ge Q., Deng X., Li S., Chen Q., Zhang H., Peng R., Peng Y., Shang H., Pan J., Shi Y., Lu Q., and Yuan Y., 2023, Fine mapping and candidate gene analysis of qFL-A12-5: a fiber length-related QTL introgressed fromGossypium barbadense into Gossypium hirsutum, Theoretical and Applied Genetics, 136(3): 48. https://doi.org/10.1007/s00122-023-04247-8 Xiong X., Zhu D., Grover C., Wendel J., Ma X., and Hu G., 2024, Dynamics of duplicated gene regulatory networks governing cotton fiber development following polyploidy, bioRxiv, 2024: 2024.08. 12.607624. https://doi.org/10.1101/2024.08.12.607624 Yang J., Gao L., Liu X., Zhang X., Wang X., and Wang Z., 2021, Comparative transcriptome analysis of fiber and nonfiber tissues to identify the genes preferentially expressed in fiber development in Gossypium hirsutum, Scientific Reports, 11(1): 22833. https://doi.org/10.1038/s41598-021-01829-8 Yang L., Qin W., Wei X., Liu R., Yang J., Wang Z., Yan Q., Zhang Y., Hu W., Han X., Gao C., Zhan J., Gao B., Ge X., Li F., and Yang Z., 2024, Regulatory networks of coresident subgenomes during rapid fiber cell elongation in upland cotton, Plant Communications, 5(12): 101130. https://doi.org/10.1016/j.xplc.2024.101130

RkJQdWJsaXNoZXIy MjQ4ODYzNA==