CGG_2025v16n1

Cotton Genomics and Genetics 2025, Vol.16, No.1, 39-47 http://cropscipublisher.com/index.php/cgg 47 Tang M., Chen Z., Grover C., Wang Y., Li S., Liu G., Ma Z., Wendel J., and Hua J., 2015, Rapid evolutionary divergence of Gossypium barbadense and G. hirsutummitochondrial genomes, BMC Genomics, 16(1): 770. https://doi.org/10.1186/s12864-015-1988-0 Wang M., Tu L., Yuan D., Zhu D., Shen C., Li J., Liu F., Pei L., Wang P., Zhao G., Ye Z., Huang H., Yan F., Ma Y., Zhang L., Liu M., You J., Yang Y., Liu Z., Huang F., Li B., Qiu P., Zhang Q., Zhu L., Jin S., Yang, X., Min L., Li G., Chen L., Zheng H., Lindsey K., Lin Z., Udall J., and Zhang X., 2018a, Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutumandGossypium barbadense, Nature Genetics, 51(2): 224-229. https://doi.org/10.1038/s41588-018-0282-x Wang M., Wang P., Lin M., Ye Z., Li G., Tu L., Shen C., Li J., Yang Q., and Zhang X., 2018b, Evolutionary dynamics of 3D genome architecture following polyploidization in cotton, Nature Plants, 4(2): 90-97. https://doi.org/10.1038/s41477-017-0096-3 Wang N., Ma Q., Ma J., Pei W., Liu G., Cui Y., Wu M., Zang X., Zhang J., Yu S., Ma L., and Yu J., 2019, A comparative genome-wide analysis of the R2R3-MYB gene family among four Gossypium species and their sequence variation and association with fiber quality traits in an interspecific G. hirsutum×G. barbadense population, Frontiers in Genetics, 10: 741. https://doi.org/10.3389/fgene.2019.00741 Wang N., Li Y., Shen C., Yang Y., Wang H., Yao T., Zhang X., Lindsey K., and Lin Z., 2022, High-resolution sequencing of nine elite upland cotton cultivars uncovers genic variations and breeding improvement targets, The Plant Journal, 113(1): 145-159. https://doi.org/10.1111/tpj.16041 Wang X., Guo H., Wang J., Lei T., Liu T., Wang Z., Li Y., Lee T., Li J., Tang H., Jin D., and Paterson A., 2016, Comparative genomic de-convolution of the cotton genome revealed a decaploid ancestor and widespread chromosomal fractionation, New Phytologist, 209(3): 1252-1263. https://doi.org/10.1111/nph.13689 Yang Z., Gao C., Zhang Y., Yan Q., Hu W., Yang L., Wang Z., and Li F., 2022a, Recent progression and future perspectives in cotton genomic breeding, Journal of Integrative Plant Biology, 65(2): 548-569. https://doi.org/10.1111/jipb.13388 Yang Z., Qanmber G., Wang Z., Yang Z., and Li F., 2020, Gossypiumgenomics: trends, scope, and utilization for cotton improvement, Trends in Plant Science, 25(5): 488-500. https://doi.org/10.1016/j.tplants.2019.12.011 Yang Z., Wang J., Huang Y., Wang S., Wei L., Liu D., Weng Y., Xiang J., Zhu Q., Yang Z., Nie X., Yu Y., Yang Z., and Yang Q., 2022b, CottonMD: a multi-omics database for cotton biological study, Nucleic Acids Research, 51(D1): D1446-D1456. https://doi.org/10.1093/nar/gkac863 Yu J., Jung S., Cheng C., Ficklin S., Lee T., Zheng P., Jones D., Percy R., and Main D., 2013, CottonGen: a genomics, genetics and breeding database for cotton research, Nucleic Acids Research, 42(D1): D1229-D1236. https://doi.org/10.1093/nar/gkt1064 Yu J., Jung S., Cheng C., Lee T., Zheng P., Buble K., Crabb J., Humann J., Hough H., Jones D., Campbell J., Udall J., and Main D., 2015, CottonGen: the community database for cotton genomics, genetics, and breeding research, Plants, 10(12): 2805. https://doi.org/10.3390/plants10122805 Zhang T., Hu Y., Jiang W., Fang L., Guan X., Chen J., Zhang J., Saski C., Scheffler B., Stelly D., Hulse-Kemp A., Wan Q., Liu B., Liu C., Wang S., Pan M., Wang Y., Wang D., Ye W., Chang L., Zhang W., Song Q., Kirkbride R., Chen X., Dennis E., Llewellyn D., Peterson D., Thaxton P., Jones D., Wang Q., Xu X., Zhang H., Wu H., Zhou L., Mei G., Chen S., Tian Y., Xiang D., Li X., Ding J., Zuo Q., Tao L., Liu Y., Li J., Lin Y., Hui Y., Cao Z., Cai C., Zhu X., Jiang Z., Zhou B., Guo W., Li R., and Chen Z., 2015, Sequencing of allotetraploid cotton (Gossypium hirsutumL. acc. TM-1) provides a resource for fiber improvement, Nature Biotechnology, 33(5): 531-537. https://doi.org/10.1038/nbt.3207 Zhang Z., Li J., Jamshed M., Shi Y., Liu A., Gong J., Wang S., Zhang J., Sun F., Jia F., Ge Q., Fan L., Zhang Z., Pan J., Fan S., Wang Y., Lu Q., Liu R., Deng X., Zou X., Jiang X., Liu P., Li P., Iqbal M., Zhang C., Zou J., Chen H., Tian Q., Jia X., Wang B., Ai N., Feng G., Wang Y., Hong M., Li S., Lian W., Wu B., Hua J., Zhang C., Huang J., Xu A., Shang H., Gong W., and Yuan Y., 2019, Genome‐wide quantitative trait loci reveal the genetic basis of cotton fibre quality and yield‐related traits in a Gossypium hirsutumrecombinant inbred line population, Plant Biotechnology Journal, 18(1): 239-253. https://doi.org/10.1111/pbi.13191 Zhu T., Liang C., Meng Z., Sun G., Meng Z., Guo S., and Zhang R., 2017, CottonFGD: an integrated functional genomics database for cotton, BMC Plant Biology, 17(1): 101. https://doi.org/10.1186/s12870-017-1039-x

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