CGG_2024v15n2

Cotton Genomics and Genetics 2024, Vol.15, No.2, 81-92 http://cropscipublisher.com/index.php/cgg 91 Hörandl E., 2022, Novel approaches for species concepts and delimitation in polyploids and hybrids, Plants, 11(2): 204. https://doi.org/10.3390/plants11020204 Hu Y., Chen J., Fang L., Zhang Z., Ma W., Niu Y., Ju L., Deng J., Zhao T., Lian J., Baruch K., Fang D., Liu X., Ruan Y., Rahman M., Han J., Wang K., Wang Q., Wu H., Mei G., Zang Y., Han Z., Xu C., Shen W., Yang D., Si Z., Dai F., Zou L., Huang F., Bai Y., Zhang Y., Brodt A., Ben-Hamo H., Zhu X., Zhou B., Guan X., Zhu S., Chen X., and Zhang T., 2019, Gossypium barbadense and Gossypium hirsutumgenomes provide insights into the origin and evolution of allotetraploid cotton, Nature Genetics, 51(4): 739-748. https://doi.org/10.1038/s41588-019-0371-5 Huang G., Wu Z., Percy R., Bai M., Li Y., Frelichowski J., Hu J., Wang K., Yu J., and Zhu Y., 2020, Genome sequence of Gossypium herbaceumand genome updates of Gossypium arboreumandGossypium hirsutumprovide insights into cotton A-genome evolution, Nature Genetics, 52(5): 516-524. https://doi.org/10.1038/s41588-020-0607-4 Kushanov F.N., Komilov D.J., Turaev O.S., Ernazarova D.K., Amanboyeva R.S., Gapparov B.M., and Yu J.Z., 2022, Genetic analysis of mutagenesis that induces the photoperiod insensitivity of wild cotton Gossypium hirsutumsubsp. purpurascens, Plants, 11(22): 3012. https://doi.org/10.3390/plants11223012 Li B., Liang S., Alariqi M., Wang F., Wang G., Wang Q., Xu Z., Yu L., Zafar M., Sun L., Si H., Yuan D., Guo W., Wang Y., Lindsey K., Zhang X., and Jin S., 2021, The application of temperature sensitivity CRISPR/LbCpf1 (LbCas12a) mediated genome editing in allotetraploid cotton (G. hirsutum) and creation of nontransgenic, gossypol‐free cotton, Plant Biotechnology Journal, 19(2): 221. https://doi.org/10.1111/pbi.13470 Lu H., Cui X., Zhao Y., Magwanga R.O., Li P., Cai X., Zhou Z., Wang X., Liu Y., Xu Y., Hou Y., Peng R., Wang K., and Liu F., 2020, Identification of a genome-specific repetitive element in the GossypiumD genome, Peer J, 8: e8344. https://doi.org/10.7717/peerj.8344 Mandák B., Krak K., Vít P., Lomonosova M.N., Belyayev A., Habibi F., Wang L., Douda J., and Štorchová H., 2018, Hybridization and polyploidization within the Chenopodium albumaggregate analysed by means of cytological and molecular markers, Molecular Phylogenetics and Evolution, 129: 189-201. https://doi.org/10.1016/j.ympev.2018.08.016 Morales-Aranibar L., Yucra F., Aranibar C., Saenz M., Gonzales H., Aguilera J., Álvarez J., Zuffo A., Steiner F., Ratke R., and Teodoro P.E., 2023, First report on the genetic diversity of populations of Gossypium barbadense L. and Gossypium hirsutun L. in the Amazonian native communities, Cusco-Peru, Plants, 12(4): 865. https://doi.org/10.3390/plants12040865 Paterson A., Wendel J., Gundlach H., Guo H., Jenkins J., Jin D., Llewellyn D., Showmaker K., Shu S., Udall J., Yoo M., Byers R., Chen W., Doron-Faigenboim A., Duke M., Gong L., Grimwood J., Grover C., Grupp K., Hu G., Lee T., Li J., Lin L., Liu T., Marler B., Page J., Roberts A., Romanel E., Sanders W., Szadkowski E., Tan X., Tang H., Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F., Bowers J., Brubaker C., Chee P., Das S., Gingle A., Haigler C., Harker D., Hoffmann L., Hovav R., Jones D., Lemke C., Mansoor S., Rahman M., Rainville L., Rambani A., Reddy U., Rong J., Saranga Y., Scheffler B., Scheffler J., Stelly D., Triplett B., Deynze A., Vaslin M., Waghmare V., Walford S., Wright R., Zaki E., Zhang T., Dennis E., Mayer K., Peterson D., Rokhsar D., Wang X., and Schmutz J., 2012, Repeated polyploidization of Gossypiumgenomes and the evolution of spinnable cotton fibres, Nature, 492(7429): 423-427. https://doi.org/10.1038/nature11798 Peng R., Xu Y., Tian S., Unver T., Liu Z., Zhou Z., Cai X., Wang K., Wei Y., Liu Y., Wang H., Hu G., Zhang Z., Grover C., Hou Y., Wang Y., Li P., Wang T., Lu Q., Wang Y., Conover J., Ghazal H., Wang Q., Zhang B., Montagu M., Peer Y., Wendel J., and Liu F., 2022, Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons, Proceedings of the National Academy of Sciences, 119(39): e2208496119. https://doi.org/10.1073/pnas.2208496119 Qin L., Li J., Wang Q., Xu Z., Sun L., Alariqi M., Manghwar H., Wang G., Li B., Ding X., Rui H., Huang H., Lu T., Lindsey K., Daniell H., Zhang X., and Jin S., 2020, High‐efficient and precise base editing of C• G to T• A in the allotetraploid cotton (Gossypium hirsutum) genome using a modified CRISPR/Cas9 system, Plant Biotechnology Journal, 18(1): 45-56. https://doi.org/10.1111/pbi.13168 Serra V., Gammuto L., Nitla V., Castelli M., Lanzoni O., Sassera D., Bandi C., Sandeep B., Verni F., Modeo L., and Petroni G., 2020, Morphology, ultrastructure, genomics, and phylogeny of Euplotes vanleeuwenhoeki sp. nov. and its ultra-reduced endosymbiont "Candidatus Pinguicoccus supinus" sp. nov., Scientific Reports, 10(1): 20311. https://doi.org/10.1038/s41598-020-76348-z Udall J.A., Long E., Ramaraj T., Conover J.L., Yuan D., Grover C.E., Gong L., Arick M., Masonbrink R., Peterson D., and Wendel J.F., 2019, The genome sequence of Gossypioides kirkii illustrates a descending dysploidy in plants, Frontiers in Plant Science, 10: 1541. https://doi.org/10.3389/fpls.2019.01541 Viot C.R., and Wendel J.F., 2023, Evolution of the cotton genus, Gossypium, and its domestication in the Americas, Critical Reviews in Plant Sciences, 42(1): 1-33. https://doi.org/10.1080/07352689.2022.2156061 Wang K., Wendel J.F., and Hua J., 2018, Designations for individual genomes and chromosomes in Gossypium, Journal of Cotton Research, 1(1): 1-5. https://doi.org/10.1186/s42397-018-0002-1 Wang M., Tu L., Yuan D., Zhu D., Shen C., Li J., Liu F., Pei L., Wang P., Zhao G., Ye Z., Huang H., Yan F., Ma Y., Zhang L., Liu M., You J., Yang Y., Liu Z., Huang F., Li B., Qiu P., Zhang Q., Zhu L., Jin S., Yang X., Min L., Li G., Chen L., Zheng H., Lindsey K., Lin Z., Udall J., and Zhang X., 2019, Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutumand Gossypium barbadense, Nature Genetics, 51(2): 224-229. https://doi.org/10.1038/s41588-018-0282-x

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