CGG_2024v15n2

Cotton Genomics and Genetics 2024, Vol.15, No.2, 66-80 http://cropscipublisher.com/index.php/cgg 79 Li J., Yuan D., Wang P., Wang Q., Sun M., Liu Z., Si H., Xu Z., Ma Y., Zhang B., Pei L., Tu L., Zhu L., Chen L., Lindsey K., Zhang X., Jin S., and Wang M., 2021, Cotton pan-genome retrieves the lost sequences and genes during domestication and selection, Genome Biology, 22: 119. https://doi.org/10.1186/s13059-021-02351-w Li T., Ma X., Li N., Zhou L., Liu Z., Han H., Gui Y., Bao Y., Chen J., Dai X., 2017, Genome-wide association study discovered candidate genes of Verticillium wilt resistance in upland cotton (Gossypium hirsutumL.), Plant Biotechnol. J., 15(12): 1520-1532. https://doi.org/10.1111/pbi.12734 Liu X., Zhao B., Zheng H., Hu Y., Lu G., Yang C., Chen J., Chen J., Chen D., Zhang L., Zhou Y., Wang L., Guo W., Bai Y., Ruan J., Shangguan X., Mao Y., Shan C., Jiang J., Zhu Y., Jin L., Kang H., Chen S., He X., Wang R., Wang Y., Chen J., Wang L., Yu S., Wang B., Wei J., Song S., Lu X., Gao Z., Gu W., Deng X., Ma D., Wang S., Liang W., Fang L., Cai C., Zhu X., Zhou B., Chen Z., Xu S., Zhang Y., Wang S., Zhang T., Zhao G., and Chen X., 2015, Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites, Scientific Reports, 5: 14139. https://doi.org/10.1038/srep14139 Lu H., Cui X., Zhao Y., Magwang R., Li P., Cai X., Zhou Z., Wang X., Liu Y., Xu Y., Hou Y., Peng R., Wang K., and Liu F., 2019, Identification of a genome-specific repetitive element in the GossypiumD genome, Peer J., 8: e8344. https://doi.org/10.7717/peerj.8344 Ma X., and Cao X., 2018, Cotton variant genomes-a breakthrough in population genetics analysis, Science China Life Sciences, 61: 869-870. https://doi.org/10.1007/s11427-018-9326-4 Pan Y., Meng F., and Wang X., 2020, Sequencing multiple cotton genomes reveals complex structures and lays foundation for breeding, Frontiers in Plant Science, 11: 560096. https://doi.org/10.3389/fpls.2020.560096 Peng R., Jones D.C., Liu F., and Zhang B., 2021, From sequencing to genome editing for cotton improvement, Trends Biotechnol., 39(3): 221-224. https://doi.org/10.1016/j.tibtech.2020.09.001 Thyssen G., Jenkins J., McCarty J., Zeng L., Campbell B., Delhom C., Islam M., Li P., Jones D., Condon B., and Fang D., 2018, Whole genome sequencing of a MAGIC population identified genomic loci and candidate genes for major fiber quality traits in upland cotton (Gossypium hirsutumL.), Theoretical and Applied Genetics, 132: 989-999. https://doi.org/10.1007/s00122-018-3254-8 Wang K., Wang D., Zheng X., Qin A., Zhou J., Guo B., Chen Y., Wen X., Ye W., Zhou Y., and Zhu Y., 2019, Multi-strategic RNA-seq analysis reveals a high-resolution transcriptional landscape in cotton, Nature Communications, 10: 4714. https://doi.org/10.1038/s41467-019-12575-x Wang K., Wang D., Zheng X., Qin A., Zhou J., Guo B., Chen Y., Wen X., Ye W., Zhou Y., and Zhu Y., 2019, Multi-strategic RNA-seq analysis reveals a high-resolution transcriptional landscape in cotton, Nature Communications, 10: 4714. https://doi.org/10.1038/s41467-019-12575-x Wang M., Tu L., Lin M., Lin Z., Wang P., Yang Q., Ye Z., Shen C., Li J., Zhang L., Zhou X., Nie X., Li Z., Guo K., Ma Y., Huang C., Jin S., Zhu L., Yang X., Min L., Yuan D., Zhang Q., Lindsey K., and Zhang X., 2017, Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication, Nature Genetics, 49: 579-587. https://doi.org/10.1038/ng.3807 Wang M., Tu L., Yuan D., Zhu D., Shen C., Li J., Liu F., Pei L., Wang P., Zhao G., Ye Z., Huang H., Yan F., Ma Y., Zhang L., Liu M., You J., Yang Y., Liu Z., Huang F., Li B., Qiu P., Zhang Q., Zhu L., Jin S., Yang X., Min L., Li G., Chen L., Zheng H., Lindsey K., Lin Z., Udall J., and Zhang X., 2018, Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutumand Gossypium barbadense, Nature Genetics, 51: 224-229. https://doi.org/10.1038/s41588-018-0282-x Wang P., Zhang J., Sun L., Ma Y., Xu J., Liang S., Deng J., Tan J., Zhang Q., Tu L., Daniell H., Jin S., and Zhang X., 2017, High efficient multisites genome editing in allotetraploid cotton (Gossypium hirsutum) using CRISPR/Cas9 system, Plant Biotechnology Journal, 16: 137-150. https://doi.org/10.1111/pbi.12755 Wang X., Guo H., Wang J., Lei T., Liu T., Wang Z., Li Y., Lee T., Li J., Tang H., Jin D., and Paterson A., 2016, Comparative genomic de-convolution of the cotton genome revealed a decaploid ancestor and widespread chromosomal fractionation, The New Phytologist, 209(3): 1252-1263. https://doi.org/10.1111/nph.13689 Yang Z., Gao C., Zhang Y., Yan Q., Hu W., Yang L., Wang Z., and Li F., 2022, Recent progression and future perspectives in Cotton genomic breeding, Journal of Integrative Plant Biology, 65(2): 548-569. https://doi.org/10.1111/jipb.13388 Yang Z., Qanmber G., Wang Z., Yang Z., and Li, F., 2020, Gossypiumgenomics: trends, scope, and utilization for cotton improvement, Trends in Plant Science, 25(5): 488-500. https://doi.org/10.1016/j.tplants.2019.12.011 Yu J., Jung S., Cheng C., Lee T., Zheng P., Buble K., Crabb J., Humann J., Hough H., Jones D., Campbell J., Udall J., and Main D., 2015, Cotton Gen: The community database for cotton genomics, genetics, and breeding research, Plants, 10(12): 2805. https://doi.org/10.3390/plants10122805 Zhang K., Kuraparthy V., Fang H., Zhu L., Sood S., and Jones D., 2019, High-density linkage map construction and QTL analyses for fiber quality, yield and morphological traits using CottonSNP63K array in upland cotton (Gossypium hirsutumL.), BMC Genomics, 20: 889. https://doi.org/10.1186/s12864-019-6214-z

RkJQdWJsaXNoZXIy MjQ4ODYzNQ==