CGG_2024v15n2

Cotton Genomics and Genetics 2024, Vol.15, No.2, 66-80 http://cropscipublisher.com/index.php/cgg 78 in cotton breeding.The combination of these advanced techniques and collaborative efforts will likely lead to the realization of "super cotton" varieties that are not only high-yielding and high-quality but also resilient to environmental challenges, ensuring a sustainable and profitable cotton industry for the future. Acknowledgments We would like to thank the peer reviewers for their valuable feedback and suggestions on my research. Conflict of Interest Disclosure The authors affirm that this research was conducted without any commercial or financial relationships that could be construed as a potential conflict of interest. References Abdelraheem A., Elassbli H., Zhu Y., Kuraparthy V., Hinze L., Stelly D., Wedegaertner T., and Zhang J., 2019, A genome-wide association study uncovers consistent quantitative trait loci for resistance to Verticillium wilt and Fusarium wilt race 4 in the US Upland cotton, Theoretical and Applied Genetics, 133: 563-577. https://doi.org/10.1007/s00122-019-03487-x Ashraf J., Zuo D., Wang Q., Malik W., Zhang Y., Abid M., Cheng H., Yang Q., and Song G., 2018, Recent insights into cotton functional genomics: progress and future perspectives, Plant Biotechnology Journal, 16: 699-713. https://doi.org/10.1111/pbi.12856 Dai F., Chen J., Zhang Z., Liu F., Li J., Zhao T., Hu Y., Zhang T., and Fang L., 2022, COTTONOMICS: a comprehensive cotton multi-omics database, Database: The Journal of Biological Databases and Curation, 2022: 1-8. https://doi.org/10.1093/database/baac080 Du X., Huang G., He S., Yang Z., Sun G., Ma X., Li N., Zhang X., Sun J., Liu M., Jia Y., Pan Z., Gong W., Liu Z., Zhu H., Ma L., Liu F., Yang D., Wang F., Fan W., Gong Q., Peng Z., Wang L., Wang X., Xu S., Shang H., Lu C., Zheng H., Huang S., Lin T., Zhu Y., and Li F., 2018, Resequencing of 243 diploid cotton accessions based on an updated a genome identifies the genetic basis of key agronomic traits, Nature Genetics, 50: 796-802. https://doi.org/10.1038/s41588-018-0116-x Fan L., Wang L., Wang X., Zhang H., Zhu Y., Guo J., Gao W., Geng H., Chen Q., and Qu Y., 2018, A high-density genetic map of extra-long staple cotton (Gossypium barbadense) constructed using genotyping-by-sequencing based single nucleotide polymorphic markers and identification of fiber traits-related QTL in a recombinant inbred line population, BMC Genomics, 19: 489. https://doi.org/10.1186/s12864-018-4890-8 Gao W., Long L., Tian X., Xu F., Liu J., Singh P., Botella J., and Song C., 2017, Genome editing in cotton with the CRISPR/Cas9 system, Frontiers in Plant Science, 8: 1364. https://doi.org/10.3389/fpls.2017.01364 He S., Sun G., Geng X., Gong W., Dai P., Jia Y., Shi W., Pan Z., Wang J., Wang L., Xiao S., Chen B., Cui S., You C., Xie Z., Wang F., Sun J., Fu G., Peng Z., Hu D., Wang L., Pang B., and Du X., 2021, The genomic basis of geographic differentiation and fiber improvement in cultivated cotton, Nature Genetics, 53: 916-924. https://doi.org/10.1038/s41588-021-00844-9 Huang G., Huang J., Chen X., and Zhu Y., 2021, Recent advances and future perspectives in cotton research, Annual Review of Plant Biology, 72: 437-462. https://doi.org/10.1146/annurev-arplant-080720-113241 Huang G., Wu Z., Percy R., Bai M., Li Y., Frelichowski J., Hu J., Wang K., Yu J., and Zhu Y., 2020, Genome sequence of Gossypium herbaceumand genome updates of Gossypium arboreumandGossypium hirsutumprovide insights into cotton A-genome evolution, Nature Genetics, 52: 516-524. https://doi.org/10.1038/s41588-020-0607-4 Li C., Fu Y., Sun R., Wang Y., and Wang Q., 2018, Single-Locus and multi-locus genome-wide association studies in the genetic dissection of fiber quality traits in upland cotton (Gossypium hirsutumL.), Frontiers in Plant Science, 9: e86308. https://doi.org/10.3389/fpls.2018.01083 Li C., Unver T., and Zhang B., 2017, A high-efficiency CRISPR/Cas9 system for targeted mutagenesis in Cotton (Gossypium hirsutumL.), Scientific Reports, 7: 43902. https://doi.org/10.1038/srep43902 Li C., Wang Y., Ai N., Li Y., and Song J., 2018, A genome-wide association study of early-maturation traits in upland cotton based on the Cotton SNP80K array, Journal of Integrative Plant Biology, 60(10): 970-985. https://doi.org/10.1111/jipb.12673 Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R., Ma Z., Shang H., Ma X., Wu J., Liang X., Huang G., Percy R., Liu K., Yang W., Chen W., Du X., Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W., Wei H., Wei S., Huang G., Zhang X., Zhu S., Zhang H., Sun F., Wang X., Liang J., Wang J., He Q., Huang L., Wang J., Cui J., Song G., Wang K., Xu X., Yu J., Zhu Y., and Yu S., 2015, Genome sequence of cultivated Upland cotton (Gossypium hirsutumTM-1) provides insights into genome evolution, Nature Biotechnology, 33: 524-530. https://doi.org/10.1038/nbt.3208

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