Genomics and Applied Biology 2024, Vol.15, No.5, 235-244 http://bioscipublisher.com/index.php/gab 243 Du Q., Wu Z., Liu P., Qing J., He F., Du L., Sun Z., Zhu L., Zheng H., Sun Z., Yang L., Wang L., and Du H., 2023, The chromosome-level genome of Eucommia ulmoides provides insights into sex differentiation and α-linolenic acid biosynthesis. Frontiers in plant science, 14: 1118363. https://doi.org/10.3389/fpls.2023.1118363 Dobrogojski J., Adamiec M., and Luciński R., 2020, The chloroplast genome: a review, Acta physiologiae plantarum, 42: 98. https://doi.org/10.1007/s11738-020-03089-x Freudenthal J., Pfaff S., Terhoeven N., Korte A., Ankenbrand M., and Förster F., 2020, A systematic comparison of chloroplast genome assembly tools, Genome Biology, 21(1): 254. https://doi.org/10.1186/s13059-020-02153-6 Fučíková K., Lewis P., and Lewis L., 2016, Chloroplast phylogenomic data from the green algal order Sphaeropleales (Chlorophyceae, Chlorophyta) reveal complex patterns of sequence evolution, Molecular Phylogenetics and Evolution, 98: 176-183. https://doi.org/10.1016/j.ympev.2016.01.022 Green B., 2011, Chloroplast genomes of photosynthetic eukaryotes, The Plant Journal, 66(1): 34-44. https://doi.org/10.1111/j.1365-313X.2011.04541.x Hu X., Li Y., Xia Y., and Ma Y., 2023, The MYB transcription factor family in Eucommia ulmoides: genome-wide identification, characterization, and network analysis in relation to the rubber biosynthetic genes, Forests, 14(10): 2064. https://doi.org/10.3390/f14102064 Heinze B., 2021, Sequencing of complete chloroplast genomes, In: Besse P. (eds), Molecular Plant Taxonomy. Methods in Molecular Biology, Humana, New York, NY, 2222: 89-105. https://doi.org/10.1007/978-1-0716-0997-2_5 Jin C., Li Z., Li Y., Wang S., Li L., and Liu M., 2020, Update of genetic linkage map and QTL analysis for growth traits in Eucommia ulmoides oliver, Forests, 11(3): 311. https://doi.org/10.3390/f11030311 Li Q., Li Y., Song J., Xu H., Xu J., Zhu Y., Li X., Gao H., Dong L., Qian J., Sun C., and Chen S., 2014, High-accuracy de novo assembly and SNP detection of chloroplast genomes using a SMRT circular consensus sequencing strategy, New phytologist, 204(4): 1041-1049. https://doi.org/10.1111/nph.12966 Li Y., Dong Y., Liu Y., Yu X., Yang M., and Huang Y., 2021, Comparative analyses of euonymus chloroplast genomes: genetic structure, screening for loci with suitable polymorphism, positive selection genes, and phylogenetic relationships within celastrineae, Frontiers in Plant Science, 11: 593984. https://doi.org/10.3389/fpls.2020.593984 Li Y., Wei H., Yang J., Du K., Li J., Zhang Y., Qiu T., Liu Z., Ren Y., Song L., and Kang X., 2020, High-quality de novo assembly of the Eucommia ulmoides haploid genome provides new insights into evolution and rubber biosynthesis, Horticulture Research, 7: 183. https://doi.org/10.1038/s41438-020-00406-w Lian J., and Tong Y., 2019, The complete chloroplast genome of Aucuba obcordata (Rehder) Fu ex W. K. Hu et Soong (Garryaceae) from China. Mitochondrial DNA, Part B, 4(2): 2471-2472. https://doi.org/10.1080/23802359.2019.1638843 Liu F., and Melton J., 2021, Chloroplast genomes of the green-tide forming alga Ulva compressa: comparative chloroplast genomics in the genus Ulva (Ulvophyceae, Chlorophyta), Frontiers in Marine Science , 8: 668542. https://doi.org/10.3389/fmars.2021.668542 Liu S., Ni Y., Li J., Zhang X., Yang H., Chen H., and Liu C., 2023, CPGView: A package for visualizing detailed chloroplast genome structures, Molecular Ecology Resources, 23(3): 694-704. https://doi.org/10.1111/1755-0998.13729 Mo P., Chen Y., Zou F., Zhou J., Zou W., and Gao J., 2022, Nocardiopsis eucommiae sp. nov., a novel endophytic actinomycete isolated from leaves of Eucommia ulmoides Oliv, International journal of systematic and evolutionary microbiology, 72(12): 005654. https://doi.org/10.1099/ijsem.0.005654 Provan J., Powell W., and Hollingsworth P., 2001, Chloroplast microsatellites: new tools for studies in plant ecology and evolution. Trends in Ecology and Evolution, 16(3): 142-147. https://doi.org/10.1016/S0169-5347(00)02097-8 Qing J., Du Q., Meng Y., Liu P., Du H., and Wang L., 2021, Genome-wide identification and expression pattern analysis of the ribonuclease T2 family in Eucommia ulmoides, Scientific Reports, 11: 6900. https://doi.org/10.1038/s41598-021-86337-5 Rogers M., Gilson P., Su V., McFadden G., and Keeling P., 2007, The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts, Molecular Biology and Evolution, 24(1): 54-62. https://doi.org/10.1093/molbev/msl129 Ravi V., Khurana J., Tyagi A., and Khurana P., 2008, An update on chloroplast genomes, Plant Systematics and Evolution, 271: 101-122. https://doi.org/10.1007/s00606-007-0608-0 Shi C., Hu N., Huang H., Gao J., Zhao Y., and Gao L., 2012, An improved chloroplast DNA extraction procedure for whole plastid genome sequencing. PLoS ONE, 7(2): e31468. https://doi.org/10.1371/journal.pone.0031468
RkJQdWJsaXNoZXIy MjQ4ODYzMg==