GAB_2024v15n4

Genomics and Applied Biology 2024, Vol.15, No.4, 200-211 http://bioscipublisher.com/index.php/gab 210 Kim D., Yang J., Ha S., Kim J., Lee J., and Lim S., 2021, An OsKala3, R2R3 MYB TF, Is a common key player for black rice pericarp as main partner of an OsKala4, bHLH TF, Frontiers in Plant Science, 12: 765049. https://doi.org/10.3389/fpls.2021.765049 Lachagari V., Gupta R., Lekkala S., Mahadevan L., Kuriakose B., Chakravartty N., Katta A., Santhosh S., Reddy A., and Thomas G., 2019, Whole genome sequencing and comparative genomic analysis reveal allelic variations unique to a purple colored rice landrace (Oryza sativa ssp. indica cv. Purpleputtu), Frontiers in Plant Science, 10: 513. https://doi.org/10.3389/fpls.2019.00513 Li Q., Lu L., Liu H., Bai X., Zhou X., Wu B., Yuan M., Yang L., and Xing Y., 2020, A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice, Theoretical and Applied Genetics, 133: 2387-2399. https://doi.org/10.1007/s00122-020-03606-z Li Y., Shan X., Tong L., Wei C., Lu K., Li S., Kimani S., Wang S., Wang L., and Gao X., 2020, The conserved and particular roles of R2R3-MYB regulator FhPAP1 fromFreesia hybrida in flower anthocyanin biosynthesis, Plant & Cell Physiology, 61(7): 1365-1380. https://doi.org/10.1093/pcp/pcaa065 Liu X., Li D., Zhang D., Yin D., Zhao Y., Ji C., Zhao X., Li X., He Q., Chen R., Hu S., and Zhu L., 2018, A novel antisense long noncoding RNA, TWISTED LEAF, maintains leaf blade flattening by regulating its associated sense R2R3-MYBgene in rice, The New Phytologist, 218(2): 774-788. https://doi.org/10.1111/nph.15023 Mackon E., Jeazet Dongho Epse Mackon G.C., Ma Y., Haneef Kashif M., Ali N., Usman B., and Liu P., 2021, Recent insights into anthocyanin pigmentation, synthesis, trafficking, and regulatory mechanisms in rice (Oryza sativa L.) caryopsis, Biomolecules, 11: 394. https://doi.org/10.3390/biom11030394 Monna L., Ohta R., Masuda H., Koike A., and Minobe Y., 2006, Genome-wide searching of single-nucleotide polymorphisms among eight distantly and closely related rice cultivars (Oryza sativa L.) and a wild accession (Oryza rufipogon Griff.), DNA Research, 13(2): 43-51. https://doi.org/10.1093/DNARES/DSI030 Sakamoto W., Ohmori T., Kageyama K., Miyazaki C., Saito A., Murata M., Noda K., and Maekawa M., 2001, The purple leaf (Pl) locus of rice: the Pl(w) allele has a complex organization and includes two genes encoding basic helix-loop-helix proteins involved in anthocyanin biosynthesis, Plant & Cell Physiology, 42(9): 982-991. https://doi.org/10.1093/PCP/PCE128 Shi Y., Zeng W., Xu M., Li H., Zhang F., Chen Z., Anicet G., Huang S., Huang Y., Wang X., Li J., Zhang X., Zheng Y., and Rehman S., 2022, Comprehensive analysis of glutamate receptor-like genes in rice (Oryza sativa L.): genome-wide identification, characteristics, evolution, chromatin accessibility, gcHap Diversity, population variation and expression analysis, Current Issues in Molecular Biology, 44: 6404-6427. https://doi.org/10.3390/cimb44120437 Shin D., Choi M., Kang C., Park C., Choi S., and Park Y., 2016, A wheat R2R3-MYB protein PURPLE PLANT1 (TaPL1) functions as a positive regulator of anthocyanin biosynthesis, Biochemical and Biophysical Research Communications, 469(3): 686-691. https://doi.org/10.1016/j.bbrc.2015.12.001 Temnykh S., DeClerck G., Lukashova A., Lipovich L., Cartinhour S., and McCouch S., 2001, Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential, Genome Research, 11(8): 1441-1452. https://doi.org/10.1101/GR.184001 Upadhyaya G., Das A., and Ray S., 2021, A rice R2R3-MYB (OsC1) transcriptional regulator improves oxidative stress tolerance by modulating anthocyanin biosynthesis, Physiologia Plantarum, 173(4): 2334-2349. https://doi.org/10.1111/ppl.13583 Wang C., and Shu Q., 2007, Fine mapping and candidate gene analysis of purple pericarp gene Pb in rice (Oryza sativa L.), Chinese Science Bulletin, 52: 3097-3104. https://doi.org/10.1007/S11434-007-0472-X Xia D., Zhou H., Wang Y., Li P., Fu P., Wu B. and He Y., 2021, How rice organs are colored: the genetic basis of anthocyanin biosynthesis in rice, The Crop Journal, 9: 598-608. https://doi.org/10.1016/j.cj.2021.03.01 Xiong Q., Sun C., Li A., Zhang J., Shi Q., Zhang Y., Hu J., Zhou N., Wei H., and Liu B., 2022, Metabolomics and biochemical analyses revealed metabolites important for the antioxidant properties of purple glutinous rice, Food Chemistry, 389: 133080. https://doi.org/10.1016/j.foodchem.2022.133080 Yan J., Zou D., Li C., Zhang Z., Song S., and Wang X., 2020, SR4R: An integrative SNP resource for genomic breeding and population research in rice, Genomics, Proteomics & Bioinformatics, 18: 173-185. https://doi.org/10.1016/j.gpb.2020.03.002 Yang C., Li D., Liu X., Ji C., Hao L., Zhao X., Li X., Chen C., Cheng Z., and Zhu L., 2014, OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.), BMC Plant Biology, 14: 158. https://doi.org/10.1186/1471-2229-14-158 Yang W., Feng L., Luo J., Zhang H., Jiang F., He Y., Li X., Du J., Adjei M., Luan A., and Ma J., 2023, Genome-wide identification and characterization of R2R3-MYB provide insight into anthocyanin biosynthesis regulation mechanism of ananas comosus var bracteatus, International Journal of Molecular Sciences, 24(4): 3133. https://doi.org/10.3390/ijms24043133

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