CMB_2025v15n6

Computational Molecular Biology 2025, Vol.15, No.6, 299-306 http://bioscipublisher.com/index.php/cmb 306 Sobecky P., and Coombs J., 2009, Horizontal gene transfer in metal and radionuclide contaminated soils, Horizontal Gene Transfer: Genomes in Flux, 2009: 455-472. https://doi.org/10.1007/978-1-60327-853-9_26 Song W., Wemheuer B., Zhang S., Steensen K., and Thomas T., 2019, MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches, Microbiome, 7(1): 36. https://doi.org/10.1186/s40168-019-0649-y Tsirigos A., and Rigoutsos I., 2005, A new computational method for the detection of horizontal gene transfer events, Nucleic Acids Research, 33(3): 922-933. https://doi.org/10.1093/nar/gki187 Wijaya A., Anžel A., Richard H., and Hattab G., 2025, Current state and future prospects of horizontal gene transfer detection, NAR Genomics and Bioinformatics, 7(1): lqaf005. https://doi.org/10.1093/nargab/lqaf005 Yuan L., Lu H., Li F., Nielsen J., and Kerkhoven E., 2023, HGTphyloDetect: facilitating the identification and phylogenetic analysis of horizontal gene transfer, Briefings in Bioinformatics, 24(2): bbad035. https://doi.org/10.1093/bib/bbad035 Zhu Q., Kosoy M., and Dittmar K., 2014, HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers, BMC Genomics, 15(1): 717. https://doi.org/10.1186/1471-2164-15-717 Zhu S., Hong J., and Wang T., 2024, Horizontal gene transfer is predicted to overcome the diversity limit of competing microbial species, Nature Communications, 15(1): 800. https://doi.org/10.1038/s41467-024-45154-w

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