Computational Molecular Biology 2025, Vol.15, No.5, 254-264 http://bioscipublisher.com/index.php/cmb 264 Wang M., Song W., Ming C., Wang Q., Zhou X., Xu P., Krek A., Yoon Y., Ho L., Orr M., Yuan G., and Zhang B., 2022, Guidelines for bioinformatics of single-cell sequencing data analysis in Alzheimer’s disease: review, recommendation, implementation and application, Molecular Neurodegeneration, 17(1): 17. https://doi.org/10.1186/s13024-022-00517-z Wang Z., Lin S., Zou Q., Cui Y., Han C., Li Y., Li J., Zhao Y., Gao R., Song J., and Yuan Z., 2024, NicheTrans: spatial-aware cross-omics translation, bioRxiv, 5: 626986. https://doi.org/10.1101/2024.12.05.626986 Winter S., Mahzarnia A., Anderson R., Han Z., Tremblay J., Stout J., Moon H., Marcellino D., Dunson D., and Badea A., 2024, Brain network fingerprints of Alzheimer’s disease risk factors in mouse models with humanized APOE alleles, Magnetic Resonance Imaging, 114: 110251. https://doi.org/10.1016/j.mri.2024.110251 Xu J., Zhang P., Huang Y., Zhou Y., Hou Y., Bekris L., Lathia J., Chiang C., Li L., Pieper A., Leverenz J., Cummings J., and Cheng F., 2020, Multimodal single-cell/nucleus RNA sequencing data analysis uncovers molecular networks between disease-associated microglia and astrocytes with implications for drug repurposing in Alzheimer’s disease, Genome Research, 31(10): 1900-1912. https://doi.org/10.1101/2020.09.23.310466 Yang K., Lu K., Wu Y., Yu J., Liu B., Zhao Y., Chen J., and Zhou X., 2021, A network-based machine-learning framework to identify both functional modules and disease genes, Human Genetics, 140(6): 897-913. https://doi.org/10.1007/s00439-020-02253-0 Yu M., Sporns O., and Saykin A., 2021, The human connectome in Alzheimer disease-relationship to biomarkers and genetics, Nature Reviews Neurology, 17(9): 545-563. https://doi.org/10.1038/s41582-021-00529-1 Zhang X., Han C., Xia J., Deng L., and Dong J., 2025, Dynamic synergy network analysis reveals stage-specific regional dysfunction in Alzheimer’s disease, Brain Sciences, 15(6): 636. https://doi.org/10.3390/brainsci15060636 Zhou C., Guo H., and Cao S., 2021, Gene network analysis of Alzheimer’s disease based on network and statistical methods, Entropy, 23(10): 1365. https://doi.org/10.3390/e23101365 Zhou Y., Gao S., Deng L., Lin G., and Dong J., 2025, A group-based network analysis for Alzheimer’s disease fMRI data, Scientific Reports, 15(1): 10888. https://doi.org/10.1038/s41598-025-95190-9
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