Computational Molecular Biology 2024, Vol.14, No.3, 125-133 http://bioscipublisher.com/index.php/cmb 132 Boocock D., Hino N., Ružičková N., Hirashima T., and Hannezo É., 2020, Theory of mechanochemical patterning and optimal migration in cell monolayers, Nature Physics, 17: 267-274. https://doi.org/10.1038/S41567-020-01037-7 Bottaro S., and Lindorff-Larsen K., 2018, Biophysical experiments and biomolecular simulations: a perfect match, Science, 361: 355-360. https://doi.org/10.1126/science.aat4010 Chaplain M.A.J., Lorenzi T., and Macfarlane F.R., 2018, Bridging the gap between individual-based and continuum models of growing cell populations, Journal of Mathematical Biology, 80(1): 343-371. https://doi.org/10.1007/s00285-019-01391-y Cheng B., Lin M., Huang G., Li Y., Ji B., Genin G., Deshpande V., Lu T., and Xu F., 2017, Cellular mechanosensing of the biophysical microenvironment: a review of mathematical models of biophysical regulation of cell responses, Physics of Life Reviews, 22-23: 88-119. https://doi.org/10.1016/j.plrev.2017.06.016 Dallon J.C., 2000, Numerical aspects of discrete and continuum hybrid models in cell biology, Applied Numerical Mathematics, 32(2): 137-159. https://doi.org/10.1016/S0168-9274(99)00021-5 González-Bermúdez B., Guinea G., and Plaza G., 2019, Advances in micropipette aspiration: applications in cell biomechanics models and extended studies, Biophysical Journal, 116(4): 587-594. https://doi.org/10.1016/j.bpj.2019.01.004 Gou X., Yang J.C., and Sun D., 2020, Combined single-cell manipulation and chemomechanical modeling to probe cell migration mechanism during cell-to-cell interaction, IEEE Transactions on Biomedical Engineering, 67(5): 1474-1482. https://doi.org/10.1109/TBME.2019.2938569 Gravett M.S.C., Cocking R.C., Curd A.P., Harlen O., Leng J., Muench S.P., Peckham M., Read D.J., Rogers J., Welch R., and Harris S., 2021, Moving in the mesoscale: understanding the mechanics of cytoskeletal molecular motors by combining mesoscale simulations with imaging, Wiley Interdisciplinary Reviews: Computational Molecular Science, 12(3): e1570. https://doi.org/10.1002/wcms.1570 Guo J.J., Bao Y.Q., Li M.R., Li S., Xi L.L., Xin P.Y., Wu L., Liu H.X., and Mu Y.G., 2023, Application of computational approaches in biomembranes: from structure to function, Wiley Interdisciplinary Reviews: Computational Molecular Science, 13(6): e1679. Hussan J.R., Trew M.L., and Hunter P.J., 2022, Simplifying the process of going from cells to tissues using statistical mechanics, Frontiers in Physiology, 13: 837027. https://doi.org/10.3389/fphys.2022.837027 Ji B., and Bao G., 2011, Cell and molecular biomechanics: perspectives and challenges, Acta Mechanica Solida Sinica, 24(1): 27-51. https://doi.org/10.1016/S0894-9166(11)60008-6 Jones G., and Chapman S., 2012, Modeling growth in biological materials, SIAM Rev., 54: 52-118. https://doi.org/10.1137/080731785 Li Y., Wong I., and Guo M., 2022, Reciprocity of cell mechanics with extracellular stimuli: emerging opportunities for translational medicine, Small, e2107305. https://doi.org/10.1002/smll.202107305 Liebman C., McColloch A., Rabiei M., Bowling A., and Cho M., 2020, Mechanics of the cell: Interaction mechanisms and mechanobiological models, Current Topics in Membranes, 86: 143-184. https://doi.org/10.1016/bs.ctm.2020.09.001 Liedekerke P., Neitsch J., Johann T., Warmt E., González-Valverde I., Hoehme S., Grosser S., Kaes J., and Drasdo D., 2019, A quantitative high-resolution computational mechanics cell model for growing and regenerating tissues, Biomechanics and Modeling in Mechanobiology, 19: 189-220. https://doi.org/10.1007/s10237-019-01204-7 Mardt A., and Noé F., 2021, Progress in deep Markov state modeling: coarse graining and experimental data restraints, The Journal of Chemical Physics, 155(21): 214106. https://doi.org/10.1063/5.0064668 Marrink S.J., Corradi V., Souza P.C.T., Ingólfsson H.I., Tieleman D., and Sansom M., 2019, Computational modeling of realistic cell membranes, Chemical Reviews, 119(9): 6184-6226. https://doi.org/10.1021/acs.chemrev.8b00460 Marzban B., Kang J., Li N., Sun Y., and Yuan H., 2019, A contraction-reaction-diffusion model: integrating biomechanics and biochemistry in cell migration, Extreme Mechanics Letters, 32: 100566. https://doi.org/10.1016/j.eml.2019.100566 Mierke C.T., 2020, Mechanical cues affect migration and invasion of cells from three different directions, Frontiers in Cell and Developmental Biology, 8: 583226. https://doi.org/10.3389/fcell.2020.583226 Murphy L., and Madzvamuse A., 2019, A moving grid finite element method applied to a mechanobiochemical model for 3D cell migration, Applied Numerical Mathematics, 158: 336-359. https://doi.org/10.1016/j.apnum.2020.08.004 Nathwani B., Shih W.M., and Wong W.P., 2018, Force spectroscopy and beyond: innovations and opportunities, Biophysical Journal, 115(12): 2279-2285. https://doi.org/10.1016/j.bpj.2018.10.021
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